290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology

PeerJ

article

Benjamin J. Tully¹  Rohan Sachdeva²  Elaina D. Graham²  John F. Heidelberg¹ 

[1] Center for Dark Energy Biosphere Investigations, University of Southern California;Department of Biological Sciences, University of Southern California

关键词: Metagenomics;    Metagenome-assembled genomes;    Mediterranean sea;    Bacteria;    Archaea;    Tara oceans;   

DOI  :  10.7717/peerj.3558

学科分类：社会科学、人文和艺术（综合）

来源: Inra

【 摘 要 】

The Tara Oceans Expedition has provided large, publicly-accessible microbial metagenomic datasets from a circumnavigation of the globe. Utilizing several size fractions from the samples originating in the Mediterranean Sea, we have used current assembly and binning techniques to reconstruct 290 putative draft metagenome-assembled bacterial and archaeal genomes, with an estimated completion of ≥50%, and an additional 2,786 bins, with estimated completion of 0–50%. We have submitted our results, including initial taxonomic and phylogenetic assignments, for the putative draft genomes to open-access repositories for the scientific community to use in ongoing research.

【 授权许可】

CC BY