Data challenges of biomedical researchers in the age of omics

PeerJ

article

Rolando Garcia-Milian¹  Denise Hersey²  Milica Vukmirovic³  Fanny Duprilot⁴ 

[1] Bioinformatics Support Program, Research and Education Services, Cushing/Whitney Medical Library, Yale University;Science Libraries, Lewis Science Library, Princeton University, Princeton;Pulmonary Critical Care & Sleep Medicine, Yale School of Medicine, Yale University;Service commun de la documentation, Université Denis Diderot

关键词: Information seeking behavior;    Data interpretation;    Statistical;    Genomics;    Computational biology;    Software;    Survey;   

DOI  :  10.7717/peerj.5553

学科分类：社会科学、人文和艺术（综合）

来源: Inra

【 摘 要 】

BackgroundHigh-throughput technologies are rapidly generating large amounts of diverse omics data. Although this offers a great opportunity, it also poses great challenges as data analysis becomes more complex. The purpose of this study was to identify the main challenges researchers face in analyzing data, and how academic libraries can support them in this endeavor.MethodsA multimodal needs assessment analysis combined an online survey sent to 860 Yale-affiliated researchers (176 responded) and 15 in-depth one-on-one semi-structured interviews. Interviews were recorded, transcribed, and analyzed using NVivo 10 software according to the thematic analysis approach.ResultsThe survey response rate was 20%. Most respondents (78%) identified lack of adequate data analysis training (e.g., R, Python) as a main challenge, in addition to not having the proper database or software (54%) to expedite analysis. Two main themes emerged from the interviews: personnel and training needs. Researchers feel they could improve data analyses practices by having better access to the appropriate bioinformatics expertise, and/or training in data analyses tools. They also reported lack of time to acquire expertise in using bioinformatics tools and poor understanding of the resources available to facilitate analysis.ConclusionsThe main challenges identified by our study are: lack of adequate training for data analysis (including need to learn scripting language), need for more personnel at the University to provide data analysis and training, and inadequate communication between bioinformaticians and researchers. The authors identified the positive impact of medical and/or science libraries by establishing bioinformatics support to researchers.

【 授权许可】

CC BY