The gut microbiome of the Sunda pangolin ( Manis javanica ) reveals its adaptation to specialized myrmecophagy

PeerJ

article

Fuhua Zhang¹  Na Xu¹  Wenhua Wang¹  Yishuang Yu¹  Shibao Wu¹ 

[1] School of Life Science, South China Normal University, Guangzhou, Guangdong Province

关键词: 16S rRNA sequencing;    Gut microbiome;    Pholidota;    Convergence;    Myrmecophage;   

DOI  :  10.7717/peerj.11490

学科分类：社会科学、人文和艺术（综合）

来源: Inra

【 摘 要 】

BackgroundThe gut microbiomes of mammals are closely related to the diets of their hosts. The Sunda pangolin (Manis javanica) is a specialized myrmecophage, but its gut microbiome has rarely been studied.MethodsUsing high-throughput Illumina barcoded 16S rRNA amplicons of nine fecal samples from nine captive Sunda pangolins, we investigated their gut microbiomes.ResultsThe detected bacteria were classified into 14 phyla, 24 classes, 48 orders, 97 families, and 271 genera. The main bacterial phyla were Firmicutes (73.71%), Proteobacteria (18.42%), Actinobacteria (3.44%), and Bacteroidetes (0.51%). In the PCoA and neighbor-net network (PERMANOVA: pangolins vs. other diets, weighted UniFrac distance p < 0.01, unweighted UniFrac distance p < 0.001), the gut microbiomes of the Sunda pangolins were distinct from those of mammals with different diets, but were much closer to other myrmecophages, and to carnivores, while distant from herbivores. We identified some gut microbiomes related to the digestion of chitin, including Lactococcus, Bacteroides, Bacillus, and Staphylococcus species, which confirms that the gut microbiome of pangolins may help them to digest chitin.SignificanceThe results will aid studies of extreme dietary adaption and the mechanisms of diet differentiation in mammals, as well as metagenomic studies, captive breeding, and ex situ conservation of pangolins.

【 授权许可】

CC BY