Genetic diversity and population structure of muscovy duck ( Cairina moschata ) from Nigeria

PeerJ

article

Adeniyi C. Adeola¹  Foluke E. Sola-Ojo⁴  Yusuf A. Opeyemi⁴  Abel O. Oguntunji⁵  Lotanna Micah Nneji⁶  Muslim K. Ewuola⁷  Semiu F. Bello⁸  Wasiu A. Olaniyi⁹  Adeosun T. Adesoji^1,10  Alex P. Karuno¹  Oscar J. Sanke^1,11  Ebiakpo Lucky Daniel^1,12 

[1] Molecular Evolution and Genome Diversity, State Key Laboratory of Genetic Resources & Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences;Sino-Africa Joint Research Center, Chinese Academy of Sciences, Sino-Africa Joint Research Center, Chinese Academy of Sciences;Centre for Biotechnology Research, Bayero University;Department of Animal Production, Faculty of Agriculture, University of Ilorin;Department of Animal Science and Fisheries Management, Bowen University;Department of Ecology and Evolutionary Biology, Princeton University, Princeton;Animal Breeding and Genetics Unit/Department of Animal Science, University of Ibadan;Department of Animal Genetics/Breeding and Reproduction/College of Animal Science, South China Agricultural University;Department of Animal Science, Faculty of Agriculture, Adekunle Ajasin University;Department of Agricultural Education, Federal College of Education;Taraba State Ministry of Agriculture and Natural Resources;Department of Animal Science, University of Benin

关键词: CYP2U1;    Cytochrome b;    Genetic diversity;    Nigerian Muscovy duck;    Population structure;   

DOI  :  10.7717/peerj.13236

学科分类：社会科学、人文和艺术（综合）

来源: Inra

【 摘 要 】

The domestic Muscovy duck (Cairina moschata) provide unique genetic resources patterned by both tropical environmental conditions and human activities, the evaluation of their genetic diversity and population structure will shade light on the mechanism of their remarkable adaptive capacities. We therefore analyzed the variation in mtDNA cytochrome b and nuclear DNA CYP2U1 sequences of 378 Nigerian Muscovy ducks (comprising of 287 de novo and 91 downloaded) plus 80 published sequences of Muscovy ducks from India. The results showed high haplotype diversity (0.800 ± 0.023) among Nigerian Muscovy duck populations with 91 distinct haplotypes for the nuclear DNA CYP2U1 gene but low (0.266 ± 0.033) for cytochrome b with 31 haplotypes. The median-joining networks of both markers grouped Nigerian Muscovy ducks into two; the first group consisting of only Nigerian Muscovy duck populations, and the second group Nigerian with Indian populations. Neutrality test results indicated that Nigerian populations experienced recent population expansion and/or genetic hitchhiking. A geographic signal was absent in line with previously studied poultry species in Nigeria. The most prominent haplotype dominated across all regions in Nigeria, which may be due to extensive genetic intermixing except for the Indian population (FST = 0.02550, P = 0.01075). This indicated low genetic differentiation between and within Nigerian Muscovy duck as revealed by the suitability of the nuclear DNA CYP2U1 gene.

【 授权许可】

CC BY