Functionally uncoupled transcription-translation inBacillus subtilis

Article

关键词: ESCHERICHIA-COLI;    BACILLUS-SUBTILIS;    RNA-POLYMERASE;    TRP OPERON;    PYRBI ATTENUATOR;    MESSENGER-RNA;    IN-VITRO;    TERMINATION;    RHO;    RIBOSOME;   

DOI  :  10.1038/s41586-020-2638-5

来源: SCIE

【 摘 要 】

Tight coupling of transcription and translation is considered a defining feature of bacterial gene expression(1,2). The pioneering ribosome can both physically associate and kinetically coordinate with RNA polymerase (RNAP)(3-11), forming a signal-integration hub for co-transcriptional regulation that includes translation-based attenuation(12,13)and RNA quality control(2). However, it remains unclear whether transcription-translation coupling-together with its broad functional consequences-is indeed a fundamental characteristic of bacteria other thanEscherichia coli. Here we show that RNAPs outpace pioneering ribosomes in the Gram-positive model bacteriumBacillus subtilis, and that this 'runaway transcription' creates alternative rules for both global RNA surveillance and translational control of nascent RNA. In particular, uncoupled RNAPs inB. subtilisexplain the diminished role of Rho-dependent transcription termination, as well as the prevalence of mRNA leaders that use riboswitches and RNA-binding proteins. More broadly, we identified widespread genomic signatures of runaway transcription in distinct phyla across the bacterial domain. Our results show that coupled RNAP-ribosome movement is not a general hallmark of bacteria. Instead, translation-coupled transcription and runaway transcription constitute two principal modes of gene expression that determine genome-specific regulatory mechanisms in prokaryotes. InBacillus subtilis, unlike inEscherichia coli, transcription and translation of genes are not tightly coupled, and pioneering ribosomes lag substantially behind RNA polymerases.

【 授权许可】

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