Comprehensive Analysis of Prognostic Alternative Splicing Signatures in Endometrial Cancer

Frontiers in Genetics

关键词: endometrial cancer;    alternative splicing events;    TCGA;    precision medicine;    prognostic signature;    splicing factors;   

DOI  :  10.3389/fgene.2020.00456

来源: DOAJ

【 摘 要 】

BackgroundAlternative splicing (AS) is one of the critical post-transcriptional regulatory mechanisms of various cancers and also plays a crucial role in the development of cancers, including endometrial cancer (EC).MethodsThe splicing data and gene expression profiles of EC were obtained from The Cancer Genome Atlas. The corresponding clinical data were extracted from TCGA-CDR. With univariate Cox regression analysis, least absolute shrinkage and selection operator model, and multivariate Cox regression analysis, the survival-related AS events were selected. Functional enrichment analysis was also performed to investigate the functions of these AS events. Splicing factors and AS regulation network were constructed to understand the correlation among these AS events.ResultA total of 1826 AS events were identified as survival-related events. Functional enrichment analysis showed that these AS events were associated with several immune system-related processes. Then, the prognostic signatures were developed based on these survival-related events and acted as an independent prognostic factor for EC. Splicing factors and AS regulation network were also constructed to understand the regulatory mechanisms of AS events in EC.ConclusionThis study systematically analyzed the role of AS events in EC and developed the prognostic model for EC.

【 授权许可】

Unknown