Identification of Intrinsically Disordered Proteins and Regions in a Non-Model Insect Species Ostrinia nubilalis (Hbn.)

Biomolecules

Miloš Avramov¹  Iva Uzelac¹  Željko D. Popović¹  Ágnes Tantos²  Éva Schád²  László Drahos³  Ágnes Révész³  Lilla Turiák³ 

[1] Department of Biology and Ecology, Faculty of Sciences, University of Novi Sad, 21000 Novi Sad, Serbia;Institute of Enzymology, Research Centre for Natural Sciences, 1117 Budapest, Hungary;Institute of Organic Chemistry, Research Centre for Natural Sciences, 1117 Budapest, Hungary;

关键词: intrinsically disordered proteins (IDPs);    intrinsically disordered protein regions (IDRs);    LC–MS/MS;    IUPred analysis;    Ostrinia nubilalis;    cold hardiness;   

DOI  :  10.3390/biom12040592

来源: DOAJ

【 摘 要 】

Research in previous decades has shown that intrinsically disordered proteins (IDPs) and regions in proteins (IDRs) are as ubiquitous as highly ordered proteins. Despite this, research on IDPs and IDRs still has many gaps left to fill. Here, we present an approach that combines wet lab methods with bioinformatics tools to identify and analyze intrinsically disordered proteins in a non-model insect species that is cold-hardy. Due to their known resilience to the effects of extreme temperatures, these proteins likely play important roles in this insect’s adaptive mechanisms to sub-zero temperatures. The approach involves IDP enrichment by sample heating and double-digestion of proteins, followed by peptide and protein identification. Next, proteins are bioinformatically analyzed for disorder content, presence of long disordered regions, amino acid composition, and processes they are involved in. Finally, IDP detection is validated with an in-house 2D PAGE. In total, 608 unique proteins were identified, with 39 being mostly disordered, 100 partially disordered, 95 nearly ordered, and 374 ordered. One-third contain at least one long disordered segment. Functional information was available for only 90 proteins with intrinsic disorders out of 312 characterized proteins. Around half of the 90 proteins are cytoskeletal elements or involved in translational processes.

【 授权许可】

Unknown