Predominant Founder Effect among Recurrent Pathogenic Variants for an X-Linked Disorder

Genes

Catherine A. Cukras¹  Chelsea Bender¹  Santa J. Tumminia¹  Bin Guan¹  Amy Turriff¹  Robert B. Hufnagel¹  Eric Feng¹  Elizabeth Geena Woo¹  Ehsan Ullah¹  Paul A. Sieving¹ 

[1] National Eye Institute, National Institutes of Health, Bethesda, MD 20892, USA;

关键词: X-linked disorder;    X-linked retinoschisis (XLRS);    RS1;    variant classification;    ACMG/AMP variant interpretation guideline;    founder effect;   

DOI  :  10.3390/genes13040675

来源: DOAJ

【 摘 要 】

For disorders with X-linked inheritance, variants may be transmitted through multiple generations of carrier females before an affected male is ascertained. Pathogenic RS1 variants exclusively cause X-linked retinoschisis (XLRS). While RS1 is constrained to variation, recurrent variants are frequently observed in unrelated probands. Here, we investigate recurrent pathogenic variants to determine the relative burden of mutational hotspot and founder allele events to this phenomenon. A cohort RS1 variant analysis and standardized classification, including variant enrichment in the XLRS cohort and in RS1 functional domains, were performed on 332 unrelated XLRS probands. A total of 108 unique RS1 variants were identified. A subset of 19 recurrently observed RS1 variants were evaluated in 190 probands by a haplotype analysis, using microsatellite and single nucleotide polymorphisms. Fourteen variants had at least two probands with common variant-specific haplotypes over ~1.95 centimorgans (cM) flanking RS1. Overall, 99/190 of reportedly unrelated probands had 25 distinct shared haplotypes. Examination of this XLRS cohort for common RS1 haplotypes indicates that the founder effect plays a significant role in this disorder, including variants in mutational hotspots. This improves the accuracy of clinical variant classification and may be generalizable to other X-linked disorders.

【 授权许可】

Unknown