Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA

Frontiers in Genetics

Jie Yan¹  Chengjiang Wu¹  Anyu Deng¹  Yun Cao¹  Xueming Zhu¹  Xiaojie Cai² 

[1] Department of Clinical Laboratory, The Second Affiliated Hospital of Soochow University, Suzhou, China;Department of Radiology, Affiliated Changshu Hospital of Soochow University, First People’s Hospital of Changshu City, Suzhou, China;

关键词: clear cell renal cell carcinoma;    glycolysis-related gene;    TCGA;    prognosis;    R programming language;   

DOI  :  10.3389/fgene.2020.589663

来源: DOAJ

【 摘 要 】

ObjectiveThe purpose of the present study was to detect novel glycolysis-related gene signatures of prognostic values for patients with clear cell renal cell carcinoma (ccRCC).MethodsGlycolysis-related gene sets were acquired from the Molecular Signatures Database (V7.0). Gene Set Enrichment Analysis (GSEA) software (4.0.3) was applied to analyze glycolysis-related gene sets. The Perl programming language (5.32.0) was used to extract glycolysis-related genes and clinical information of patients with ccRCC. The receiver operating characteristic curve (ROC) and Kaplan–Meier curve were drawn by the R programming language (3.6.3).ResultsThe four glycolysis-related genes (B3GAT3, CENPA, AGL, and ALDH3A2) associated with prognosis were identified using Cox proportional regression analysis. A risk score staging system was established to predict the outcomes of patients with ccRCC. The patients with ccRCC were classified into the low-risk group and high-risk group.ConclusionsWe have successfully constructed a risk staging model for ccRCC. The model has a better performance in predicting the prognosis of patients, which may have positive reference value for the treatment and curative effect evaluation of ccRCC.

【 授权许可】

Unknown