Population Structure, Genetic Diversity and Differentiation of Triplophysa tenuis in Xinjiang Tarim River

Frontiers in Genetics

Shengao Chen¹  Jieya Liu¹  Dapeng Li²  Jing Chen²  Xuan Liu²  Rong Tang²  Jianzhong Shen²  Xiaoyun Zhou²  Bin Huo²  Qiong Zhou² 

[1] College of Animal Science, Tarim University, Alar, China;College of Fisheries, Huazhong Agricultural University, Wuhan, China;

关键词: Triplophysa tenuis;    tarim river;    population structure;    genetic diversity;    genetic differentiation;   

DOI  :  10.3389/fgene.2022.860678

来源: DOAJ

【 摘 要 】

Triplophysa tenuis is an important indigenous fish in the Xinjiang Tarim River. In this study, we collected 120 T. tenuis individuals from 8 T. tenuis populations in the Tarim River. Through genotyping-by-sequencing (GBS), a total of 582,678,756 clean reads were generated for all the genotypes, and after quality filtering, 595,379 SNPs were obtained for the population genetic analyses. Multiple genetic parameters showed that the 8 T. tenuis populations had high genetic diversity. Phylogenetic tree analysis indicated that all T. tenuis individuals were divided into five branches, the individuals from the north of Tarim River were grouped into cluster 1 (SF and WS) and cluster 3 (DWQ, TKX, and KZE), while the AETS, WLWT and LF individuals from the south of Tarim River were clustered into cluster 2. The result was consistent with the admixture analysis, which supported that the 8 T. tenuis populations were clustered into three subgroups. Furthermore, the pairwise FST values and genetic distance indicated that there was a large genetic differentiation between WS and other T. tenuis populations. Collectively, this study provides valuable genome-wide data for the conservation of natural T. tenuis populations in the Tarim River.

【 授权许可】

Unknown