The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka

Genomics Data

Nitin K. Singh¹  Parag Vaishampayan¹  Vishakha Raina²  Mrutyunjay Suar²  Samir R. Mishra²  Pratiksha Behera³  Ajit K. Pattnaik³  Gurdeep Rastogi³ 

[1]Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, NASA, California Institute of Technology, Pasadena, CA 91109,USA

[2]School of Biotechnology, KIIT University, Patia, Bhubaneswar, 751024, Odisha, India

[3]Wetland Research and Training Centre, Chilika Development Authority, Barkul, Balugaon, 752030, Odisha, India

关键词: Mangrovibacter sp.;    Phragmites karka;    Draft genome;    Chilika;    Endophyte;   

DOI  :  10.1016/j.gdata.2016.07.007

来源: DOAJ

【 摘 要 】

Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, India. Strain MP23 is a facultative anaerobic, nitrogen-fixing endophytic bacteria that grows optimally at 37 °C, 7.0 pH, and 1% NaCl concentration. The draft genome sequence of strain MP23 contains 4,947,475 bp with an estimated G + C content of 49.9% and total 4392 protein coding genes. The genome sequence has provided information on putative genes that code for proteins involved in oxidative stress, uptake of nutrients, and nitrogen fixation that might offer niche specific ecological fitness and explain the invasive success of P. karka in Chilika Lagoon. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number LYRP00000000.

【 授权许可】

Unknown