Complete genome sequence of butenyl-spinosyn-producing Saccharopolyspora strain ASAGF58

Annals of Microbiology

Yuchun Liu¹  Weiqun Guo¹  Chao Wang¹  Chao Guo¹ 

[1] Academy of National Food and Strategic Reserves Administration;

关键词: Genome sequence;    Saccharopolyspora sp.;    Butenyl-spinosyn;    Spinosad biosynthetic gene cluster;   

DOI  :  10.1186/s13213-020-01587-4

来源: DOAJ

【 摘 要 】

Abstract Purpose This study aimed to analyze the complete genome sequence of the butenyl-spinosyn-producing strain Saccharopolyspora sp. ASAGF58, isolated from Zhejiang province. Methods PacBio RS II sequencing platform with single-molecule real-time technology was used to obtain the complete genome sequence of Saccharopolyspora sp. ASAGF58. Gene prediction and annotation analysis were carried out through several software and databases. The antiSMASH online server was used to evaluate the secondary metabolite potential of strain ASAGF58. Results The whole genome of Saccharopolyspora sp. ASAGF58 is 8,190,340 bp divided into one chromosome of 8,044,361 bp with a GC content of 68.1% and a plasmid of 145,979 bp with a GC content of 64.6%. A total of 7486 coding sequences, 15 rRNA genes, 61 tRNA genes, 41 miscRNA genes, and 1 tmRNA gene were predicted. The domains encoded by one of the type I polyketide synthase (T1PKS) gene clusters have 91% similarity with those encoded by a spinosad biosynthetic gene cluster from Saccharopolyspora spinosa. In addition, antiSMASH results predicted that the strain also contains the biosynthetic gene clusters for the synthesis of ectoine, geosmin, and erythreapeptin. Conclusions Our data revealed the complete genome sequence of a new isolated butenyl-spinosyn-producing strain. This work will provide some methods, from genetics to biotechnology and biochemistry, aimed at the production improvement of butenyl-spinosyns.

【 授权许可】

Unknown