Implementation of BiClusO and its comparison with other biclustering algorithms

Applied Network Science

Mohammad Bozlul Karim¹  Shigehiko Kanaya¹  Md. Altaf-Ul-Amin¹ 

[1] Nara Institute of Science and Technology;

关键词: Bicluster;    Gene;    Condition;    Go term;    Volatile organic compound;   

DOI  :  10.1007/s41109-019-0180-x

来源: DOAJ

【 摘 要 】

Abstract This paper describes the implementation of biclustering algorithm BiClusO using graphical user interface and different parameters to generate overlapping biclusters from a binary sparse matrix. We compare our algorithm with several other biclustering algorithms in the context of two different types of biological datasets and four synthetic datasets with known embedded biclusters. Biclustering technique is widely used in different fields of studies for analyzing bipartite relationship dataset. Over the past decade, different biclustering algorithms have been proposed by researchers which are mainly used for biological data analysis. The performance of these algorithms differs depending on dataset size, pattern, and property. These issues create difficulties for a researcher to take the right decision for selecting a good biclustering algorithm. Two different scoring methods along with Gene Ontology(GO) term enrichment analysis have been used to measure and compare the performance of our algorithm. Our algorithm shows the best performance over some other well-known biclustering algorithms.

【 授权许可】

Unknown