Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans

Genomics Data

Shelvia Malik¹  K. Roopalakshmi¹  Pankaj K. Singh²  Vineet Vishal³  Sabdar Rahaman³  Abhishek R. Bera³  Sayak Ganguli⁴ 

[1] Bengaluru Genomics Centre, Bengaluru, India;Computational Biology Division, The Biome, Kolkata 700064, India;Department of Botany, Bangabasi Evening College, Kolkata 700009, India;Theoretical and Computational Biology Division, AIIST, Palta 743122, India;

关键词: Fern Rhizospheric metagenome;    Proteobacteria;    Acidobacteria;    QIIME;    SRA;   

DOI  :  10.1016/j.gdata.2017.09.001

来源: DOAJ

【 摘 要 】

This study reports the analyses of the rhizospheric microbiome of the terrestrial mangrove fern Acrostichum aureum Linn. from the Indian Sunderbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the microbial communities prevalent in the rhizosphere. A total of 1,931,252 quality checked reads were assembled into 204,818 contigs and were analysed using QIIME to reveal the abundance of Proteobacteria, Acidobacteria and Planctomycetes. The data is available at the NCBI - Sequence Read Archive with accession number: SRX2660456. This is the first report of the rhizospheric microbiome belonging to a fern species.

【 授权许可】

Unknown