Outline of an experimental design aimed to detect protein A mirror image in solution

PeerJ Physical Chemistry

卷:1

Harold A. Scheraga¹  Yury Vorobjev²  Osvaldo A. Martin³  Jorge A. Vila³ 

[1] Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, United States of America;

[2] Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Science, Novosibirsk, Russia;

[3] Instituto de Matemática Aplicada San Luis, UNSL-CONICET, San Luis, Argentina;

关键词: Proteins;    Mirror image;    pKa;    NMR;    Chemical shifts;   

DOI  :  10.7717/peerj-pchem.2

来源: DOAJ

【 摘 要 】

There is abundant theoretical evidence indicating that a mirror image of Protein A may occur during the protein folding process. However, as to whether such mirror image exists in solution is an unsolved issue. Here we provide outline of an experimental design aimed to detect the mirror image of Protein A in solution. The proposal is based on computational simulations indicating that the use of a mutant of protein A, namely Q10H, could be used to detect the mirror image conformation in solution. Our results indicate that the native conformation of the protein A should have a pKa, for the Q10H mutant, at ≈6.2, while the mirror-image conformation should have a pKa close to ≈7.3. Naturally, if all the population is in the native state for the Q10H mutant, the pKa should be ≈6.2, while, if all are in the mirror-image state, it would be ≈7.3, and, if it is a mixture, the pKa should be larger than 6.2, presumably in proportion to the mirror population. In addition, evidence is provided indicating the tautomeric distribution of H10 must also change between the native and mirror conformations. Although this may not be completely relevant for the purpose of determining whether the protein A mirror image exists in solution, it could provide valuable information to validate the pKa findings. We hope this proposal will foster experimental work on this problem either by direct application of our proposed experimental design or serving as inspiration and motivation for other experiments.

【 授权许可】

Unknown