Theoretical investigation of cyclooxygenase inhibition property of several non-steroidal anti-inflammatory drugs by density functional theory calculations and molecular docking studies

Trends in Pharmaceutical Sciences

卷:1

关键词: Cyclooxygenase-2 inhibitors, DFT calculations, Docking studies, Homology modeling, pKa;   

DOI  :  10.1111/tips.v1i4.48

来源: DOAJ

【 摘 要 】

Understanding the geometry, electronic properties of non-steroidal anti-inflammatory drugs (NSAIDs) and the nature of their interactions with human cyclooxygenase-2 (COX-2) is important in development and design of novel NSAIDs. In this paper, B3LYP/6-311++G (d,p) level of theory was applied to assess acidity of NSAIDs in the gas phase. Subsequently, the role of intramolecular hydrogen bond on acidity of these compounds was confirmed by means of natural bond orbital (NBO) and quantum theory of atoms in molecules analyses (QTAIM). Furthermore, by applying the polarized continuum model (PCM) at the B3LYP/6-311++G(d,p) level, the pK_a value of NSAIDs in aqueous solution has been calculated. The maximum error was found to be less than 0.1 pK_a unit in comparison with the experimental value. This protocol can be used as a tool to predict pK_a values of NSAIDs in future studies. In the last step, attempts have been made to generate a functional model of the structure of human COX-2 enzyme by means of homology modeling to gain more insight to the nature of interactions between NSAIDs and the active site of this COX-2 enzyme by docking studies. In addition, a mean binding energy for each drug was estimated based on its ionization ratio.

【 授权许可】

Unknown