Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing

BMC Bioinformatics

Kanak Mahadik¹  Pranjal Jain²  Atul Sharma³  Somali Chaterji³  Ashraf Mahgoub³  Zihan Zhou³ 

[1] Adobe Research, San Jose, US;Indian Institute of Technology Bombay, Mumbai, India;Purdue University, West Lafayette, US;

关键词: Automated configuration tuning;    Parameter search space;    Natural language processing (NLP);    Error correction;    PacBio reads;    Nanopore reads;    Perplexity metric;    Transformer networks;   

DOI  :  10.1186/s12859-021-04547-0

来源: Springer

【 授权许可】

CC BY