Prediction of small-molecule compound solubility in organic solvents by machine learning algorithms

Journal of Cheminformatics

Defang Ouyang¹  Zhuyifan Ye¹ 

[1] State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences (ICMS), University of Macau, Macau, China;

关键词: Solubility prediction;    Organic solvents;    QSPR;    Machine learning;    lightGBM;    Deep learning;   

DOI  :  10.1186/s13321-021-00575-3

来源: Springer

【 摘 要 】

Rapid solvent selection is of great significance in chemistry. However, solubility prediction remains a crucial challenge. This study aimed to develop machine learning models that can accurately predict compound solubility in organic solvents. A dataset containing 5081 experimental temperature and solubility data of compounds in organic solvents was extracted and standardized. Molecular fingerprints were selected to characterize structural features. lightGBM was compared with deep learning and traditional machine learning (PLS, Ridge regression, kNN, DT, ET, RF, SVM) to develop models for predicting solubility in organic solvents at different temperatures. Compared to other models, lightGBM exhibited significantly better overall generalization (logS  ± 0.20). For unseen solutes, our model gave a prediction accuracy (logS  ± 0.59) close to the expected noise level of experimental solubility data. lightGBM revealed the physicochemical relationship between solubility and structural features. Our method enables rapid solvent screening in chemistry and may be applied to solubility prediction in other solvents.

【 授权许可】

CC BY