A cancer graph: a lung cancer property graph database in Neo4j

BMC Research Notes

David Tuck¹ 

[1] VA Boston Healthcare System, 150 South Huntington Avenue, 02130, Boston, MA, USA;

关键词: Non-small cell lung cancer;    Property graph database;    The Cancer Genome Atlas;   

DOI  :  10.1186/s13104-022-05912-9

来源: Springer

【 摘 要 】

ObjectivesA novel graph data model of non-small cell lung cancer clinical and genomic data has been constructed with two aims: (1) provide a suitable model for facilitating graph analytics within the Neo4j framework or through tools which can interact through existing Neo4j APIs; and (2) provide a base model extensible to other cancer types and additional datasets such as those derived from electronic health records and other real world sources.Data descriptionClinical and genomic data integrated with a novel property graph database schema from publicly available datasets and analyses based on The Cancer Genome Atlas lung cancer datasets augmented by with subgraphs patient-patient social network from similarity and correlation as well as individual based biological networks.

【 授权许可】

CC BY