BMC Research Notes | |
A cancer graph: a lung cancer property graph database in Neo4j | |
David Tuck1  | |
[1] VA Boston Healthcare System, 150 South Huntington Avenue, 02130, Boston, MA, USA; | |
关键词: Non-small cell lung cancer; Property graph database; The Cancer Genome Atlas; | |
DOI : 10.1186/s13104-022-05912-9 | |
来源: Springer | |
【 摘 要 】
ObjectivesA novel graph data model of non-small cell lung cancer clinical and genomic data has been constructed with two aims: (1) provide a suitable model for facilitating graph analytics within the Neo4j framework or through tools which can interact through existing Neo4j APIs; and (2) provide a base model extensible to other cancer types and additional datasets such as those derived from electronic health records and other real world sources.Data descriptionClinical and genomic data integrated with a novel property graph database schema from publicly available datasets and analyses based on The Cancer Genome Atlas lung cancer datasets augmented by with subgraphs patient-patient social network from similarity and correlation as well as individual based biological networks.
【 授权许可】
CC BY
【 预 览 】
Files | Size | Format | View |
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RO202202182079930ZK.pdf | 719KB | download |