Remarkably coherent population structure for a dominant Antarctic Chlorobium species

Microbiome

David Paez-Espino¹  Timothy J. Williams²  Ricardo Cavicchioli²  Michelle A. Allen²  Pratibha Panwar²  Sabrina Haque³  Alyce M. Hancock⁴  Sarah Brazendale⁵ 

[1] Department of Energy Joint Genome Institute, Berkeley, CA, USA;Present address: Mammoth Biosciences, Inc., 1000 Marina Blvd. Suite 600, Brisbane, CA, USA;School of Biotechnology and Biomolecular Sciences, UNSW Sydney, 2052, Sydney, New South Wales, Australia;School of Biotechnology and Biomolecular Sciences, UNSW Sydney, 2052, Sydney, New South Wales, Australia;Present address: Department of Molecular Sciences, Macquarie University, 2109, Sydney, New South Wales, Australia;School of Biotechnology and Biomolecular Sciences, UNSW Sydney, 2052, Sydney, New South Wales, Australia;Present address: Institute for Marine and Antarctic Studies, University of Tasmania, 20 Castray Esplanade, Battery Point, Tasmania, Australia;School of Biotechnology and Biomolecular Sciences, UNSW Sydney, 2052, Sydney, New South Wales, Australia;Present address: Pegarah, Australia;

关键词: Antarctic microbiology;    Green sulphur bacteria;    Chlorobi;    Vitamin B12;    Metagenome-assembled genomes;    Phylotype;    Ecotype;    Population structure;    Host-virus interactions;    Generalist virus;    Meromictic lake;    Microbial food web;   

DOI  :  10.1186/s40168-021-01173-z

来源: Springer

【 摘 要 】

BackgroundIn Antarctica, summer sunlight enables phototrophic microorganisms to drive primary production, thereby “feeding” ecosystems to enable their persistence through the long, dark winter months. In Ace Lake, a stratified marine-derived system in the Vestfold Hills of East Antarctica, a Chlorobium species of green sulphur bacteria (GSB) is the dominant phototroph, although its seasonal abundance changes more than 100-fold. Here, we analysed 413 Gb of Antarctic metagenome data including 59 Chlorobium metagenome-assembled genomes (MAGs) from Ace Lake and nearby stratified marine basins to determine how genome variation and population structure across a 7-year period impacted ecosystem function.ResultsA single species, Candidatus Chlorobium antarcticum (most similar to Chlorobium phaeovibrioides DSM265) prevails in all three aquatic systems and harbours very little genomic variation (≥ 99% average nucleotide identity). A notable feature of variation that did exist related to the genomic capacity to biosynthesize cobalamin. The abundance of phylotypes with this capacity changed seasonally ~ 2-fold, consistent with the population balancing the value of a bolstered photosynthetic capacity in summer against an energetic cost in winter. The very high GSB concentration (> 108 cells ml−1 in Ace Lake) and seasonal cycle of cell lysis likely make Ca. Chlorobium antarcticum a major provider of cobalamin to the food web. Analysis of Ca. Chlorobium antarcticum viruses revealed the species to be infected by generalist (rather than specialist) viruses with a broad host range (e.g., infecting Gammaproteobacteria) that were present in diverse Antarctic lakes. The marked seasonal decrease in Ca. Chlorobium antarcticum abundance may restrict specialist viruses from establishing effective lifecycles, whereas generalist viruses may augment their proliferation using other hosts.ConclusionThe factors shaping Antarctic microbial communities are gradually being defined. In addition to the cold, the annual variation in sunlight hours dictates which phototrophic species can grow and the extent to which they contribute to ecosystem processes. The Chlorobium population studied was inferred to provide cobalamin, in addition to carbon, nitrogen, hydrogen, and sulphur cycling, as critical ecosystem services. The specific Antarctic environmental factors and major ecosystem benefits afforded by this GSB likely explain why such a coherent population structure has developed in this Chlorobium species.FJebgLEuwcBu4fPtsFrHHTVideo abstract

【 授权许可】

CC BY