Estimating COVID-19 cases infected with the variant alpha (VOC 202012/01): an analysis of screening data in Tokyo, January-March 2021

Theoretical Biology and Medical Modelling

Hiroshi Nishiura¹  Taishi Kayano¹  Hiroaki Murayama² 

[1] Kyoto University School of Public Health, Yoshida-Konoe-cho, Sakyo-ku, 606-8501, Kyoto, Japan;School of Medicine, International University of Health and Welfare, Kozunomori 4-3, 286-8686, Narita City, Chiba, Japan;

关键词: Statistical estimation;    Mutation;    Transmissibility;    Coronavirus;    Epidemiological model;    Mathematical model;   

DOI  :  10.1186/s12976-021-00146-x

来源: Springer

【 摘 要 】

BackgroundIn Japan, a part of confirmed patients’ samples have been screened for the variant of concern (VOC), including the variant alpha with N501Y mutation. The present study aimed to estimate the actual number of cases with variant alpha and reconstruct the epidemiological dynamics.MethodsThe number of cases with variant alpha out of all PCR confirmed cases was estimated, employing a hypergeometric distribution. An exponential growth model was fitted to the growth data of variant alpha cases over fourteen weeks in Tokyo.ResultsThe weekly incidence with variant alpha from 18–24 January 2021 was estimated at 4.2 (95% confidence interval (CI): 0.7, 44.0) cases. The expected incidence in early May ranged from 420–1120 cases per week, and the reproduction number of variant alpha was on the order of 1.5 even under the restriction of contact from January-March, 2021, Tokyo.ConclusionsThe variant alpha was predicted to swiftly dominate COVID-19 cases in Tokyo, and this has actually occurred by May 2021. Devising the proposed method, any country or location can interpret the virological sampling data.

【 授权许可】

CC BY