Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability

Rice

Shuen-Fang Lo¹  Ching-Shan Tseng²  I-Wen Wang²  Chih-Hung Hsieh³  Kun-Ting Hsieh³  Shiau-Yu Shiue³  Shih-Min Lin³  Ting-Jen Hu³  Su-Hui Liu³  Yi-Ting Chen³  Liang-Jwu Chen⁴ 

[1] Biotechnology Center, National Chung Hsing University, 40227, Taichung, Taiwan;Division of Biotechnology, Taiwan Agriculture Research Institute, 41362, Taichung, Taiwan;Institute of Molecular Biology, National Chung Hsing University, 40227, Taichung, Taiwan;Institute of Molecular Biology, National Chung Hsing University, 40227, Taichung, Taiwan;Biotechnology Center, National Chung Hsing University, 40227, Taichung, Taiwan;

关键词: Duplicate genes;    Expression profile;    GA 2-oxidase gene family;    GA deactivation capability;    Phylogenetic footprinting;    Regulatory hypofunctionalization;    Sequence divergence;   

DOI  :  10.1186/s12284-021-00499-4

来源: Springer

【 摘 要 】

BackgroundGA 2-oxidases (GA2oxs) are involved in regulating GA homeostasis in plants by inactivating bioactive GAs through 2β-hydroxylation. Rice GA2oxs are encoded by a family of 10 genes; some of them have been characterized, but no comprehensive comparisons for all these genes have been conducted.ResultsRice plants with nine functional GA2oxs were demonstrated in the present study, and these genes not only were differentially expressed but also revealed various capabilities for GA deactivation based on their height-reducing effects in transgenic plants. Compared to that of wild-type plants, the relative plant height (RPH) of transgenic plants was scored to estimate their reducing effects, and 8.3% to 59.5% RPH was observed. Phylogenetic analysis of class I GA2ox genes revealed two functionally distinct clades in the Poaceae. The OsGA2ox3, 4, and 8 genes belonging to clade A showed the most severe effect (8.3% to 8.7% RPH) on plant height reduction, whereas the OsGA2ox7 gene belonging to clade B showed the least severe effect (59.5% RPH). The clade A OsGA2ox3 gene contained two conserved C186/C194 amino acids that were crucial for enzymatic activity. In the present study, these amino acids were replaced with OsGA2ox7-conserved arginine (C186R) and proline (C194P), respectively, or simultaneously (C186R/C194P) to demonstrate their importance in planta. Another two amino acids, Q220 and Y274, conserved in OsGA2ox3 were substituted with glutamic acid (E) and phenylalanine (F), respectively, or simultaneously to show their significance in planta. In addition, through sequence divergence, RNA expression profile and GA deactivation capability analyses, we proposed that OsGA2ox1, OsGA2ox3 and OsGA2ox6 function as the predominant paralogs in each of their respective classes.ConclusionsThis study demonstrates rice has nine functional GA2oxs and the class I GA2ox genes are divided into two functionally distinct clades. Among them, the OsGA2ox7 of clade B is a functional attenuated gene and the OsGA2ox1, OsGA2ox3 and OsGA2ox6 are the three predominant paralogs in the family.

【 授权许可】

CC BY