eLife | |
A deep learning algorithm to translate and classify cardiac electrophysiology | |
Junko Kurokawa1  Kazuho Sakamoto1  Colleen E Clancy2  Pei-Chi Yang2  Parya Aghasafari2  Igor Vorobyov3  Yasunari Kanda4  Divya C Kernik5  | |
[1] Department of Bio-Informational Pharmacology, School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan;Department of Physiology and Membrane Biology, University of California, Davis, Davis, United States;Department of Physiology and Membrane Biology, University of California, Davis, Davis, United States;Department of Pharmacology, University of California, Davis, Davis, United States;Division of Pharmacology, National Institute of Health Sciences, Kanagawa, Japan;Washington University in St. Louis, St. Louis, United States; | |
关键词: artificial intelligence; machine learning; deep learning; computational biology; arrhythmias; pharmacology; Human; | |
DOI : 10.7554/eLife.68335 | |
来源: eLife Sciences Publications, Ltd | |
【 摘 要 】
The development of induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) has been a critical in vitro advance in the study of patient-specific physiology, pathophysiology, and pharmacology. We designed a new deep learning multitask network approach intended to address the low throughput, high variability, and immature phenotype of the iPSC-CM platform. The rationale for combining translation and classification tasks is because the most likely application of the deep learning technology we describe here is to translate iPSC-CMs following application of a perturbation. The deep learning network was trained using simulated action potential (AP) data and applied to classify cells into the drug-free and drugged categories and to predict the impact of electrophysiological perturbation across the continuum of aging from the immature iPSC-CMs to the adult ventricular myocytes. The phase of the AP extremely sensitive to perturbation due to a steep rise of the membrane resistance was found to contain the key information required for successful network multitasking. We also demonstrated successful translation of both experimental and simulated iPSC-CM AP data validating our network by prediction of experimental drug-induced effects on adult cardiomyocyte APs by the latter.
【 授权许可】
CC BY
【 预 览 】
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