Agent-based modelling of complex factors impacting malaria prevalence

Malaria Journal

Miracle Amadi¹  Anna Shcherbacheva²  Heikki Haario³ 

[1] LUT School of Engineering Science, Lappeenranta University of Technology, Yliopistonkatu 34, Lappeenranta, Finland;LUT School of Engineering Science, Lappeenranta University of Technology, Yliopistonkatu 34, Lappeenranta, Finland;Finnish Geospatial Research Institute, Geodeetinrinne 2, 02431, Masala, Finland;LUT School of Engineering Science, Lappeenranta University of Technology, Yliopistonkatu 34, Lappeenranta, Finland;Finnish Meteorological Institute, Erik Palménin aukio 1, 00560, Helsinki, Finland;

关键词: Computational biology;    Socio-economic factors;    Agent-based modelling;    Prevention of reintroduction;    Long-lasting insecticidal nets;    Multiscale modelling;   

DOI  :  10.1186/s12936-021-03721-2

来源: Springer

【 摘 要 】

BackgroundIncreasingly complex models have been developed to characterize the transmission dynamics of malaria. The multiplicity of malaria transmission factors calls for a realistic modelling approach that incorporates various complex factors such as the effect of control measures, behavioural impacts of the parasites to the vector, or socio-economic variables. Indeed, the crucial impact of household size in eliminating malaria has been emphasized in previous studies. However, increasing complexity also increases the difficulty of calibrating model parameters. Moreover, despite the availability of much field data, a common pitfall in malaria transmission modelling is to obtain data that could be directly used for model calibration.MethodsIn this work, an approach that provides a way to combine in situ field data with the parameters of malaria transmission models is presented. This is achieved by agent-based stochastic simulations, initially calibrated with hut-level experimental data. The simulation results provide synthetic data for regression analysis that enable the calibration of key parameters of classical models, such as biting rates and vector mortality. In lieu of developing complex dynamical models, the approach is demonstrated using most classical malaria models, but with the model parameters calibrated to account for such complex factors. The performance of the approach is tested against a wide range of field data for Entomological Inoculation Rate (EIR) values.ResultsThe overall transmission characteristics can be estimated by including various features that impact EIR and malaria incidence, for instance by reducing the mosquito–human contact rates and increasing the mortality through control measures or socio-economic factors.ConclusionComplex phenomena such as the impact of the coverage of the population with long-lasting insecticidal nets (LLINs), changes in behaviour of the infected vector and the impact of socio-economic factors can be included in continuous level modelling. Though the present work should be interpreted as a proof of concept, based on one set of field data only, certain interesting conclusions can already be drawn. While the present work focuses on malaria, the computational approach is generic, and can be applied to other cases where suitable in situ data is available.

【 授权许可】

CC BY