Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer types

Journal of Translational Medicine

Runmei Li¹  Yiwei Huang²  Yuansheng Zheng²  Songtao Xu²  Cheng Zhan²  Jiaqi Liang²  Mengnan Zhao²  Hong Fan²  Guoshu Bi² 

[1] Department of Biostatistics, Public Health, Fudan University, 200000, Shanghai, China;Department of Thoracic Surgery, Zhongshan Hospital, Fudan University, No. 180 Fenglin Rd, Xuhui District, 200032, Shanghai, China;

关键词: Invasiveness;    Pan-cancer;    Multi-omics;    Molecular features;    Immunity;   

DOI  :  10.1186/s12967-021-02773-x

来源: Springer

【 摘 要 】

BackgroundTumor invasiveness reflects many biological changes associated with tumorigenesis, progression, metastasis, and drug resistance. Therefore, we performed a systematic assessment of invasiveness-related molecular features across multiple human cancers.Materials and methodsMulti-omics data, including gene expression, miRNA, DNA methylation, and somatic mutation, in approximately 10,000 patients across 30 cancer types from The Cancer Genome Atlas, Gene Expression Omnibus, PRECOG, and our institution were enrolled in this study.ResultsBased on a robust gene signature, we established an invasiveness score and found that the score was significantly associated with worse prognosis in almost all cancers. Then, we identified common invasiveness-associated dysregulated molecular features between high- and low-invasiveness score group across multiple cancers, as well as investigated their mutual interfering relationships thus determining whether the dysregulation of invasiveness-related genes was caused by abnormal promoter methylation or miRNA expression. We also analyzed the correlations between the drug sensitivity data from cancer cell lines and the expression level of 685 invasiveness-related genes differentially expressed in at least ten cancer types. An integrated analysis of the correlations among invasiveness-related genetic features and drug response were conducted in esophageal carcinoma patients to outline the complicated regulatory mechanism of tumor invasiveness status in multiple dimensions. Moreover, functional enrichment suggests the invasiveness score might serve as a predictive biomarker for cancer patients receiving immunotherapy.ConclusionOur pan-cancer study provides a comprehensive atlas of tumor invasiveness and may guide more precise therapeutic strategies for tumor patients.

【 授权许可】

CC BY