A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines

Genetics and Molecular Biology

Leandro Costa Do Nascimento²  Gustavo Gilson Lacerda Costa²  Eliseu Binneck¹  Gonçalo Amarante Guimarães Pereira²  Marcelo Falsarella Carazzolle² 

[1] ,Universidade Estadual de Campinas Instituto de Biologia Departamento de Genética, Evolução e BioagentesCampinas SP ,Brazil

关键词: bioinformatics;    database;    gene expression;    soybean;    Genosoja;   

DOI  :  10.1590/S1415-47572012000200002

来源: SciELO

【 摘 要 】

The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.

【 授权许可】

CC BY   
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