Multi-Sided Compression Performance Assessment of ABI SOLiD WES Data

Algorithms

Tommaso Mazza¹ 

关键词: data compression;    genomics;    next-generation sequencing;    SOLiD;   

DOI  :  10.3390/a6020309

来源: mdpi

【 摘 要 】

Data storage is a major and growing part of IT budgets for research since many years. Especially in biology, the amount of raw data products is growing continuously, and the advent of the so-called “next-generation” sequencers has made things worse. Affordable prices have pushed scientists to massively sequence whole genomes and to screen large cohort of patients, thereby producing tons of data as a side effect. The need for maximally fitting data into the available storage volumes has encouraged and welcomed new compression algorithms and tools. We focus here on state-of-the-art compression tools and measure their compression performance on ABI SOLiD data.

【 授权许可】

CC BY   
© 2013 by the authors; licensee MDPI, Basel, Switzerland.