Peach-Grape system - a high performance simulator for biomolecules

Chem-Bio Informatics Journal

Masami Uebayasi¹  Yuto Komeiji¹ 

[1] IBRF/RICS, National Institute of Advanced Industrial Science and Technology

关键词: MD;    分子動力学;    simulation;    シミュレーション;    Peach;    Grape;    protein;    タンパク質;    DNA;   

DOI  :  10.1273/cbij.2.102

学科分类：生物化学/生物物理

来源: Chem-Bio Informatics Society

【 摘 要 】

References(52)A high performance system for the molecular dynamics simulation of biological molecules was constructed by combining a software package, Peach, with a special-purpose computer, Grape. The resultant simulator "Peach-Grape system" was used to analyze several important biological molecules including the Hin/DNA complex, the trp-Repressor/DNA complex, and Calmodulin. In addition to those simulations performed by the Peach-Grape system, other simulation studies of biomolecules by special-purpose computers are briefly reviewed.

【 授权许可】

Unknown