Genomic Locus Modulating IOP in the BXD RI Mouse Strains

G3: Genes, Genomes, Genetics

Ying Li^1¹  Rebecca King^1²  Jiaxing Wang^2³ 

[1] Department of Ophthalmology, Emory University, Atlanta, Georgia 30322;Department of Ophthalmology, Emory University, Atlanta, Georgia 30322^1;Department of Ophthalmology, Tianjin Medical University General Hospital, Tianjin, China^2

关键词: BXD;    cadherin;    eye;    glaucoma;    intraocular pressure;    IOP;    mouse;    quantitative trait mapping;   

DOI  :  10.1534/g3.118.200190

学科分类：生物科学（综合）

来源: Genetics Society of America

【 摘 要 】

Intraocular pressure (IOP) is the primary risk factor for developing glaucoma, yet little is known about the contribution of genomic background to IOP regulation. The present study leverages an array of systems genetics tools to study genomic factors modulating normal IOP in the mouse. The BXD recombinant inbred (RI) strain set was used to identify genomic loci modulating IOP. We measured the IOP in a total of 506 eyes from 38 different strains. Strain averages were subjected to conventional quantitative trait analysis by means of composite interval mapping. Candidate genes were defined, and immunohistochemistry and quantitative PCR (qPCR) were used for validation. Of the 38 BXD strains examined the mean IOP ranged from a low of 13.2mmHg to a high of 17.1mmHg. The means for each strain were used to calculate a genome wide interval map. One significant quantitative trait locus (QTL) was found on Chr.8 (96 to 103 Mb). Within this 7 Mb region only 4 annotated genes were found: Gm15679 , Cdh8 , Cdh11 and Gm8730 . Only two genes ( Cdh8 and Cdh11 ) were candidates for modulating IOP based on the presence of non-synonymous SNPs. Further examination using SIFT (Sorting Intolerant From Tolerant) analysis revealed that the SNPs in Cdh8 (Cadherin 8) were predicted to not change protein function; while the SNPs in Cdh11 (Cadherin 11) would not be tolerated, affecting protein function. Furthermore, immunohistochemistry demonstrated that CDH11 is expressed in the trabecular meshwork of the mouse. We have examined the genomic regulation of IOP in the BXD RI strain set and found one significant QTL on Chr. 8. Within this QTL, there is one good candidate gene, Cdh11 .

【 授权许可】

CC BY