Comparative transcriptomics of Pleurotus eryngii reveals blue-light regulation of carbohydrate-active enzymes (CAZymes) expression at primordium differentiated into fruiting body stage

Genomics

Chunliang Xie^1¹ 

[1] Institute of Bast Fiber Crops, Chinese Academy of Agricultural Sciences, Changsha, People's Republic of China^1

关键词: AAs;    auxiliary activities;    CDS;    coding DNA sequence;    CEs;    carbohydrate esterases;    CBMs;    carbohydrate-binding modules;    COG;    Cluster of Orthologous Groups;    DEGs;    differentially expressed genes;    FDR;    false discovery rate;    FPKM;    Fragments Per Kilobase of transcript per Million;    GO;    Gene Ontology;    GHs;    glycosyl hydrolases;    GTs;    glycosyl transferases;    KEGG;    Kyoto Encyclopedia of Genes and Genomes;    MnP;    manganese peroxidase;    NR;    non-redundant;    PLs;    polysaccharide lyases;    RH;    relative humidity;    SRA;    Sequence Read Archive;    Blue light;    Carbohydrate-active enzymes;    High-throughput sequencing approach;    Primordium differentiated into fruiting body;   

DOI  :  10.1016/j.ygeno.2017.09.012

学科分类：医学（综合）

来源: Academic Press

【 摘 要 】

Blue light is an important environmental factor which could induce mushroom primordium differentiation and fruiting body development. However, the mechanisms of Pleurotus eryngii primordium differentiation and development induced by blue light are still unclear. The CAZymes (carbohydrate-active enzymes) play important roles in degradation of renewable lignocelluloses to provide carbohydrates for fungal growth, development and reproduction. In the present research, the expression profiles of genes were measured by comparison between the Pleurotus eryngii at primordium differentiated into fruiting body stage after blue light stimulation and dark using high-throughput sequencing approach. After assembly and compared to the Pleurotus eryngii reference genome, 11,343 unigenes were identified. 539 differentially expressed genes including white collar 2 type of transcription factor gene, A mating type protein gene, MAP kinase gene, oxidative phosphorylation associated genes, CAZymes genes and other metabolism related genes were identified during primordium differentiated into fruiting body stage after blue light stimulation. KEGG results showed that carbon metabolism, glycolysis/gluconeogenesis and biosynthesis of amino acids pathways were affected during blue light inducing primordia formation. Most importantly, 319 differentially expressed CAZymes participated in carbon metabolism were identified. The expression patterns of six representative CAZymes and laccase genes were further confirmed by qRT-PCR. Enzyme activity results indicated that the activities of CAZymes and laccase were affected in primordium differentiated into fruiting body under blue light stimulation. In conclusion, the comprehensive transcriptome and CAZymes of Pleurotus eryngii at primordium differentiated into fruiting body stage after blue light stimulation were obtained. The biological insights gained from this integrative system represent a valuable resource for future genomic studies on this commercially important mushroom.

【 授权许可】

CC BY