Retrovirology | |
The dUTPase-related gene of bovine immunodeficiency virus is critical for viral replication, despite the lack of dUTPase activity of the encoded protein | |
Amnon Hizi1  Eytan Herzig1  Nickolay Voronin1  | |
[1] Department of Cell and Developmental Biology, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel | |
关键词: Retroviral replication; Lentiviruses; BIV; dUTPase; | |
Others : 1159850 DOI : 10.1186/1742-4690-11-60 |
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received in 2014-05-02, accepted in 2014-07-09, 发布年份 2014 | |
【 摘 要 】
Background
Deoxyuridine 5′-triphosphate nucleotide-hydrolases (dUTPases) are essential for maintaining low intra-cellular dUTP/dTTP ratios. Therefore, many viruses encode this enzyme to prevent dUTP incorporation into their genomes instead of dTTP. Among the lentiviruses, the non-primate viruses express dUTPases. In bovine immunodeficiency virus (BIV), the putative dUTPase protein is only 74 residues-long, compared to ~130 residues in other lentiviruses.
Results
In this study, the recombinant BIV dUTPase, as well as infectious wild-type (WT) BIV virions, were shown to lack any detectable dUTPase activity. Controls of recombinant dUTPase from equine infectious anemia virus (EIAV) or of EIAV virions showed substantial dUTPase activities. To assess the importance of the dUTPase to BIV replication, we have generated virions of WT BIV or BIV with mutations in the dUTPase gene. The two mutant viral dUTPases were the double mutant D48E/N57S (in the putative enzyme active site and its vicinity) and a deletion of 36 residues. In dividing Cf2Th cells and under conditions where the WT virus was infectious and generated progeny virions, both mutant viruses were defective, as no progeny viruses were generated. Analyses of the integrated viral cDNA showed that cells infected with the mutant virions carry in their genomic DNA levels of integrated BIV DNA that are comparable to those in WT BIV-infected cells.
Conclusions
The herby presented results show that the two BIV mutants with the modified dUTPase gene could infect cells, as viral cDNA was synthesized and integrated into the host cell DNA. However, no virions were generated by cells infected by these mutants. The most likely explanation is that either the integrated cDNA of the mutants is defective (due to potential multiple mutations, introduced during reverse-transcription) or that the original dUTPase mutations have led to severe blocks in viral replication at steps post integration. These results emphasize the importance of the dUTPase-related sequence to BIV replication, despite the lack of any detectable catalytic activity.
【 授权许可】
2014 Voronin et al.; licensee BioMed Central Ltd.
【 预 览 】
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【 参考文献 】
- [1]McGeoch DJ: Protein sequence comparisons show that the ‘pseudoproteases’ encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphatase family. Nucleic Acids Res 1990, 18:4105-4110.
- [2]Payne SL, Elder JH: The role of retroviral dUTPases in replication and virulence. Curr Protein Pept Sci 2001, 2:381-388.
- [3]Vertessy BG, Toth J: Keeping uracil out of DNA: physiological role, structure and catalytic mechanism of dUTPases. Acc Chem Res 2009, 42:97-106.
- [4]Chen R, Wang H, Mansky LM: Roles of uracil-DNA glycosylase and dUTPase in virus replication. J Gen Virol 2002, 83:2339-2345.
- [5]Coffin JM, Hughes SH, Varmus HE: Retroviruses. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press; 1997.
- [6]Herschhorn A, Hizi A: Retroviral reverse transcriptases. Cell Mol Life Sci 2010, 67:2717-2747.
- [7]Hizi A, Tal R, Shaharabany M, Loya S: Catalytic properties of the reverse transcriptases of human immunodeficiency viruses type 1 and type 2. J Biol Chem 1991, 266:6230-6239.
- [8]Klarmann GJ, Chen X, North TW, Preston BD: Incorporation of uracil into minus strand DNA affects the specificity of plus strand synthesis initiation during lentiviral reverse transcription. J Biol Chem 2003, 278:7902-7909.
- [9]Lerner DL, Wagaman PC, Phillips TR, Prospero-Garcia O, Henriksen SJ, Fox HS, Bloom FE, Elder JH: Increased mutation frequency of feline immunodeficiency virus lacking functional deoxyuridine-triphosphatase. Proc Natl Acad Sci U S A 1995, 92:7480-7484.
- [10]Duker NJ, Grant CL: Alterations in the levels of deoxyuridine triphosphatase, uracil-DNA glycosylase and AP endonuclease during the cell cycle. Exp Cell Res 1980, 125:493-497.
- [11]Mahagaokar S, Orengo A, Rao PN: The turnover of deoxyuridine triphosphate during the HeLa cell cycle. Exp Cell Res 1980, 125:86-94.
- [12]Lichtenstein DL, Rushlow KE, Cook RF, Raabe ML, Swardson CJ, Kociba GJ, Issel CJ, Montelaro RC: Replication in vitro and in vivo of an equine infectious anemia virus mutant deficient in dUTPase activity. J Virol 1995, 69:2881-2888.
- [13]Turelli P, Petursson G, Guiguen F, Mornex JF, Vigne R, Querat G: Replication properties of dUTPase-deficient mutants of caprine and ovine lentiviruses. J Virol 1996, 70:1213-1217.
- [14]Steagall WK, Robek MD, Perry ST, Fuller FJ, Payne SL: Incorporation of uracil into viral DNA correlates with reduced replication of EIAV in macrophages. Virology 1995, 210:302-313.
- [15]Fiser A, Vertessy BG: Altered subunit communication in subfamilies of trimeric dUTPases. Biochem Biophys Res Commun 2000, 279:534-542.
- [16]Di Tommaso P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM, Taly JF, Notredame C: T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res 2011, 39(Web Server issue):W13-W17.
- [17]Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C: Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures. Nat Protoc 2011, 6:1669-1682.
- [18]Wagaman PC, Hasselkus-Light CS, Henson M, Lerner DL, Phillips TR, Elder JH: Molecular cloning and characterization of deoxyuridine triphosphatase from feline immunodeficiency virus (FIV). Virology 1993, 196:451-457.
- [19]Petursson G, Turelli P, Matthiasdottir S, Georgsson G, Andresson OS, Torsteinsdottir S, Vigne R, Andresdottir V, Gunnarsson E, Agnarsdottir G, Quérat G: Visna virus dUTPase is dispensable for neuropathogenicity. J Virol 1998, 72:1657-1661.
- [20]Avidan O, Bochner R, Hizi A: The catalytic properties of the recombinant reverse transcriptase of bovine immunodeficiency virus. Virology 2006, 351:42-57.
- [21]Avidan O, Hizi A: Expression and characterization of the integrase of bovine immunodeficiency virus. Virology 2008, 371:309-321.
- [22]Turelli P, Guiguen F, Mornex JF, Vigne R, Querat G: dUTPase-minus caprine arthritis-encephalitis virus is attenuated for pathogenesis and accumulates G-to-A substitutions. J Virol 1997, 71:4522-4530.
- [23]Priet S, Navarro JM, Gros N, Querat G, Sire J: Differential incorporation of uracil DNA glycosylase UNG2 into HIV-1, HIV-2, and SIV(MAC) viral particles. Virology 2003, 307:283-289.
- [24]Priet S, Gros N, Navarro JM, Boretto J, Canard B, Querat G, Sire J: HIV-1-associated uracil DNA glycosylase activity controls dUTP misincorporation in viral DNA and is essential to the HIV-1 life cycle. Mol Cell 2005, 17:479-490.
- [25]Yan N, O’Day E, Wheeler LA, Engelman A, Lieberman J: HIV DNA is heavily uracilated, which protects it from autointegration. Proc Natl Acad Sci USA 2011, 108:9244-9249.
- [26]Hizi A, Henderson LE, Copeland TD, Sowder RC, Krutzsch HC, Oroszlan S: Analysis of gag proteins from mouse mammary tumor virus. J Virol 1989, 63:2543-2549.
- [27]Hizi A, Henderson LE, Copeland TD, Sowder RC, Hixson CV, Oroszlan S: Characterization of mouse mammary tumor virus gag-pro gene products and the ribosomal frameshift site by protein sequencing. Proc Natl Acad Sci USA 1987, 84:7041-7045.
- [28]Koppe B, Menendez-Arias L, Oroszlan S: Expression and purification of the mouse mammary tumor virus gag-pro transframe protein p30 and characterization of its dUTPase activity. J Virol 1994, 68:2313-2319.
- [29]Barabas O, Rumlova M, Erdei A, Pongracz V, Pichova I, Vertessy BG: dUTPase and nucleocapsid polypeptides of the Mason-Pfizer monkey virus form a fusion protein in the virion with homotrimeric organization and low catalytic efficiency. J Biol Chem 2003, 278:38803-38812.
- [30]Elder JH, Lerner DL, Hasselkus-Light CS, Fontenot DJ, Hunter E, Luciw PA, Montelaro RC, Phillips TR: Distinct subsets of retroviruses encode dUTPase. J Virol 1992, 66:1791-1794.
- [31]Chadwick BJ, Coelen RJ, Wilcox GE, Sammels LM, Kertayadnya G: Nucleotide sequence analysis of Jembrana disease virus: a bovine lentivirus associated with an acute disease syndrome. J Gen Virol 1995, 76:1637-1650.
- [32]Corredor AG, St-Louis MC, Archambault D: Molecular and biological aspects of the bovine immunodeficiency virus. Curr HIV Res 2010, 8:2-13.
- [33]Avidan O, Loya S, Tonjes RR, Sevilya Z, Hizi A: Expression and characterization of a recombinant novel reverse transcriptase of a porcine endogenous retrovirus. Virology 2003, 307:341-357.
- [34]Bochner R, Duvshani A, Adir N, Hizi A: Mutagenesis of Gln294 of the reverse transcriptase of human immunodeficiency virus type-2 and its effects on the ribonuclease H activity. FEBS Lett 2008, 582:2799-2805.
- [35]Kirshenboim N, Hayouka Z, Friedler A, Hizi A: Expression and characterization of a novel reverse transcriptase of the LTR retrotransposon Tf1. Virology 2007, 366:263-276.
- [36]Perach M, Hizi A: Catalytic features of the recombinant reverse transcriptase of bovine leukemia virus expressed in bacteria. Virology 1999, 259:176-189.
- [37]Sevilya Z, Loya S, Hughes SH, Hizi A: The ribonuclease H activity of the reverse transcriptases of human immunodeficiency viruses type 1 and type 2 is affected by the thumb subdomain of the small protein subunits. J Mol Biol 2001, 311:957-971.
- [38]Nord J, Larsson G, Kvassman JO, Rosengren AM, Nyman PO: dUTPase from the retrovirus equine infectious anemia virus: specificity, turnover and inhibition. FEBS Lett 1997, 414:271-274.
- [39]Barabas O, Pongracz V, Kovari J, Wilmanns M, Vertessy BG: Structural insights into the catalytic mechanism of phosphate ester hydrolysis by dUTPase. J Biol Chem 2004, 279:42907-42915.
- [40]Chan S, Segelke B, Lekin T, Krupka H, Cho US, Kim MY, So M, Kim CY, Naranjo CM, Rogers YC, Park MS, Waldo GS, Pashkov I, Cascio D, Perry JL, Sawaya MR: Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. J Mol Biol 2004, 341:503-517.
- [41]Pallansch LA, Lackman-Smith CS, Gonda MA: Bovine immunodeficiency-like virus encodes factors which trans activate the long terminal repeat. J Virol 1992, 66:2647-2652.
- [42]Montelaro RC, Ball JM, Kushlow KE: Equine retroviruses. New York: Plenum press; 1993.
- [43]Bentolila S, Bach JM, Kessler JL, Bordelais I, Cruaud C, Weissenbach J, Panthier JJ: Analysis of major repetitive DNA sequences in the dog (Canis familiaris) genome. Mamm Genome 1999, 10:699-705.
- [44]Wang W, Kirkness EF: Short interspersed elements (SINEs) are a major source of canine genomic diversity. Genome Res 2005, 15(12):1798-1808.
- [45]Pecsi I, Hirmondo R, Brown AC, Lopata A, Parish T, Vertessy BG, Toth J: The dUTPase enzyme is essential in Mycobacterium smegmatis. PLoS One 2012, 7:e37461.
- [46]Braun MJ, Lahn S, Boyd AL, Kost TA, Nagashima K, Gonda MA: Molecular cloning of biologically active proviruses of bovine immunodeficiency-like virus. Virology 1988, 167:515-523.
- [47]Payne SL, Rausch J, Rushlow K, Montelaro RC, Issel C, Flaherty M, Perry S, Sellon D, Fuller F: Characterization of infectious molecular clones of equine infectious anaemia virus. J Gen Virol 1994, 75:425-429.
- [48]Sevilya Z, Loya S, Adir N, Hizi A: The ribonuclease H activity of the reverse transcriptases of human immunodeficiency viruses type 1 and type 2 is modulated by residue 294 of the small subunit. Nucleic Acids Res 2003, 31:1481-1487.
- [49]Sevilya Z, Loya S, Duvshani A, Adir N, Hizi A: Mutagenesis of cysteine 280 of the reverse transcriptase of human immunodeficiency virus type-1: the effects on the ribonuclease H activity. J Mol Biol 2003, 327:19-30.
- [50]Bouillant AM, Nielsen K, Ruckerbauer GM, Samagh BS, Hare WC: The persistent infection of a canine thymus cell line by equine infectious anaemia virus and preliminary data on the production of viral antigens. J Virol Methods 1986, 13:309-321.
- [51]Herzig E, Voronin N, Hizi A: The removal of RNA primers from DNA synthesized by the reverse transcriptase of the retrotransposon Tf1 is stimulated by Tf1 integrase. J Virol 2012, 86:6222-6230.