Molecular Cytogenetics | |
Adult expression of a 3q13.31 microdeletion | |
Anne S Bassett1  Stephen W Scherer3  Christian R Marshall3  Anath C Lionel3  Dimitri J Stavropoulos2  Rebecca Melvin4  Gregory Costain4  Chelsea Lowther5  | |
[1] Department of Psychiatry, University of Toronto, Toronto, ON, Canada;Department of Laboratory Medicine and Pathology, University of Toronto, Toronto, ON, Canada;Department of Molecular Genetics and McLaughlin Centre, University of Toronto, Toronto, ON, Canada;Clinical Genetics Research Program, Centre for Addiction and Mental Health, Toronto, ON, Canada;Institute of Medical Science, University of Toronto, Toronto, ON, Canada | |
关键词: Nonverbal learning disability; Genomic disorder; Genetic counselling; Genotype-phenotype correlation; Copy number variation; Schizophrenia; 3q13 deletion; | |
Others : 1150231 DOI : 10.1186/1755-8166-7-23 |
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received in 2013-12-30, accepted in 2014-03-11, 发布年份 2014 | |
【 摘 要 】
Background
The emerging 3q13.31 microdeletion syndrome appears to encompass diverse neurodevelopmental conditions. However, the 3q13.31 deletion is rare and few adult cases have yet been reported. We examined a cohort with schizophrenia (n = 459) and adult control subjects (n = 26,826) using high-resolution microarray technology for deletions and duplications at the 3q13.31 locus.
Results
We report on the extended adult phenotype associated with a 3q13.31 microdeletion in a 41-year-old male proband with schizophrenia and a nonverbal learning disability. He was noted to have a speech impairment, delayed motor skills, and other features consistent with the 3q13.31 microdeletion syndrome. The 2.06 Mb deletion overlapped two microRNAs and seven RefSeq genes, including GAP43, LSAMP, DRD3, and ZBTB20. No overlapping 3q13.31 deletions or duplications were identified in control subjects.
Conclusions
Later-onset conditions like schizophrenia are increasingly associated with rare copy number variations and associated genomic disorders like the 3q13.31 microdeletion syndrome. Detailed phenotype information across the lifespan facilitates genotype-phenotype correlations, accurate genetic counselling, and anticipatory care.
【 授权许可】
2014 Lowther et al.; licensee BioMed Central Ltd.
【 预 览 】
Files | Size | Format | View |
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20150405153904325.pdf | 684KB | download | |
Figure 2. | 93KB | Image | download |
Figure 1. | 87KB | Image | download |
【 图 表 】
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【 参考文献 】
- [1]Molin AM, Andrieux J, Koolen DA, Malan V, Carella M, Colleaux L, Cormier-Daire V, David A, de Leeuw N, Delobel B, Duban-Bedu B, Fischetto R, Flinter F, Kjaergaard S, Kok F, Krepischi AC, Le Caignec C, Ogilvie CM, Maia S, Mathieu-Dramard M, Munnich A, Palumbo O, Papadia F, Pfundt R, Reardon W, Receveur A, Rio M, Ronsboro Darling L, Rosenberg C, Sa J, et al.: A novel microdeletion syndrome at 3q13.31 characterised by developmental delay, postnatal overgrowth, hypoplastic male genitals, and characteristic facial features. J Med Genet 2012, 49(2):104-109.
- [2]Shuvarikov A, Campbell IM, Dittwald P, Neill NJ, Bialer MG, Moore C, Wheeler PG, Wallace SE, Hannibal MC, Murray MF, Giovanni MA, Terespolsky D, Sodhi S, Cassina M, Viskochi D, Moghaddam B, Herman K, Brown CW, Beck CR, Gambin A, Cheung SW, Patel A, Lamb AN, Shaffer LG, Ellison JW, Ravnan JB, Stankiewicz P, Rosenfeld JA: Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays. Hum Mutat 2013, 34(10):1415-1423.
- [3]Gimelli S, Leoni M, Di Rocco M, Caridi G, Porta S, Cuoco C, Gimelli G, Tassano E: A rare 3q13.31 microdeletion including GAP43 and LSAMP genes. Mol Cytogenet 2013, 6(1):52. BioMed Central Full Text
- [4]Vuillaume ML, Delrue MA, Naudion S, Toutain J, Fergelot P, Arveiler B, Lacombe D, Rooryck C: Expanding the clinical phenotype at the 3q13.31 locus with a new case of microdeletion and first characterization of the reciprocal duplication. Mol Genet Metab 2013, 110(1–2):90-97.
- [5]Shimojima K, Saito K, Yamamoto T: A de novo 1.9-Mb interstitial deletion of 3q13.2q13.31 in a girl with dysmorphic features, muscle hypotonia, and developmental delay. Am J Med Genet A 2009, 149A(8):1818-1822.
- [6]Nielsen JV, Thomassen M, Mollgard K, Noraberg J, Jensen NA: Zbtb20 defines a hippocampal neuronal identity through direct repression of genes that control projection neuron development in the isocortex. Cereb Cortex 2013. (Epub ahead of print)
- [7]Innos J, Koido K, Philips MA, Vasar E: Limbic system associated membrane protein as a potential target for neuropsychiatric disorders. Front Pharmacol 2013, 4:32.
- [8]Allen-Brady K, Miller J, Matsunami N, Stevens J, Block H, Farley M, Krasny L, Pingree C, Lainhart J, Leppert M, MacMahon WM, Coon H: A high-density SNP genome-wide linkage scan in a large autism extended pedigree. Mol Psychiatry 2009, 14(6):590-600.
- [9]Costain G, Lionel AC, Merico D, Forsythe P, Russell K, Lowther C, Yuen T, Husted J, Stavropoulos DJ, Speevak M, Chow EW, Marshall CR, Scherer SW, Bassett AS: Pathogenic rare copy number variants in community-based schizophrenia suggest a potential role for clinical microarrays. Hum Mol Genet 2013, 22(22):4485-4501.
- [10]Kearney HM, Thorland EC, Brown KK, Quintero-Rivera F, South ST, Working Group of the American College of Medical Genetics Laboratory Quality Assurance Committee: American College of Medical Genetics standards and guidelines for interpretation and reporting of postnatal constitutional copy number variants. Genet Med 2011, 13(7):680-685.
- [11]Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM, Carter NP: DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources. Am J Hum Genet 2009, 84(4):524-533.
- [12]Lionel AC, Crosbie J, Barbosa N, Goodale T, Thiruvahindrapuram B, Rickaby J, Gazzellone M, Carson AR, Howe JL, Wang Z, Wei J, Stewart AF, Roberts R, McPherson R, Fiebig A, Franke A, Schreiber S, Zwaigenbaum L, Fernandez BA, Roberts W, Arnold PD, Szatmari P, Marshall CR, Schachar R, Scherer SW: Rare copy number variation discovery and cross-disorder comparisons identify risk genes for ADHD. Sci Transl Med 2011, 3(95):95ra75.
- [13]Macdonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW: The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res 2014, 42(1):D986-D992.
- [14]Wisniowiecka-Kowalnik B, Kastory-Bronowska M, Bartnik M, Derwinska K, Dymczak-Domini W, Szumbarska D, Ziemka E, Szczaluba K, Sykulski M, Gambin T, Shaw CA, Mazurczak T, Obersztyn E, Bocian E, Stankiewicz P: Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders. Eur J Hum Genet 2013, 21(6):620-625.
- [15]Materna-Kiryluk A, Kiryluk K, Burgess KE, Bieleninik A, Sanna-Cherchi S, Gharavi AG, Latos-Bielenska A: The emerging role of genomics in the diagnosis and workup of congenital urinary tract defects: a novel deletion syndrome on chromosome 3q13.31-22.1. Pediatr Nephrol 2014, 29(2):257-267.
- [16]Rourke BP, Ahmad SA, Collins DW, Hayman-Abello BA, Hayman-Abello SE, Warriner EM: Child clinical/pediatric neuropsychology: some recent advances. Annu Rev Psychol 2002, 53:309-339.
- [17]Need AC, McEvoy JP, Gennarelli M, Heinzen EL, Ge D, Maia JM, Shianna KV, He M, Cirulli ET, Gumbs CE, Zhao Q, Campbell CR, Hong L, Rosenquist P, Putkonen A, Hallikainen T, Repo-Tiihonen E, Tiihonen J, Levy DL, Meitzer HY, Goldstein DB: Exome sequencing followed by large-scale genotyping suggests a limited role for moderately rare risk factors of strong effect in schizophrenia. Am J Hum Genet 2012, 91(2):303-312.
- [18]Cho DI, Zheng M, Kim KM: Current perspectives on the selective regulation of dopamine D(2) and D(3) receptors. Arch Pharm Res 2010, 33(10):1521-1538.
- [19]Behan AT, Byrne C, Dunn MJ, Cagney G, Cotter DR: Proteomic analysis of membrane microdomain-associated proteins in the dorsolateral prefrontal cortex in schizophrenia and bipolar disorder reveals alterations in LAMP, STXBP1 and BASP1 protein expression. Mol Psychiatry 2009, 14(6):601-613.
- [20]Ren A, Zhang H, Xie Z, Ma X, Ji W, He DZ, Yuan W, Ding YQ, Zhang XH, Zhang WJ: Regulation of hippocampus-dependent memory by the zinc finger protein Zbtb20 in mature CA1 neurons. Physiol 2012, 590(Pt 19):4917-4932.
- [21]Xie Z, Ma X, Ji W, Zhou G, Lu Y, Xiang Z, Wang YX, Zhang L, Hu Y, Ding YQ, Zhang WJ: Zbtb20 is essential for the specification of CA1 field identity in the developing hippocampus. Proc Natl Acad Sci U S A 2010, 107(14):6510-6515.
- [22]Brzustowicz LM, Bassett AS: miRNA-mediated risk for schizophrenia in 22q11.2 deletion syndrome. Front Genet 2012, 3:291.
- [23]Mellios N, Sur M: The emerging role of microRNAs in schizophrenia and autism spectrum disorders. Front Psychiatry 2012, 3:39.
- [24]Fromer M, Pocklington AJ, Kavanagh DH, Williams HJ, Dwyer S, Gormley P, Georgieva L, Rees E, Palta P, Ruderfer DM, Handsaker RE, McCarroll SA, O’Donnovan MC, Owen MJ, Kirov G, Sullivan PF, Hultman CM, Sklar P, Purcell SM: De novo mutations in schizophrenia implicate synaptic networks. Nature 2014, 506(7487):179-184.
- [25]TargetScanHuman: prediction of microRNA targets http://targetscan.org/ webcite
- [26]Karavitakis E, Kitsiou-Tzeli S, Xaidara A, Kosma K, Makrythanasis P, Apazidou E, Kanavakis E, Tzetis M: Microduplication 3q13.2q13.31 identified in a male with dysmorphic features and multiple congenital anomalies. Am J Med Genet A 2013, 164(3):666-670.
- [27]Costain G, Bassett AS: Clinical applications of schizophrenia genetics: genetic diagnosis, risk, and counseling in the molecular era. App Clin Genet 2012, 5:1-18.
- [28]Bassett AS, Scherer SW, Brzustowicz LM: Copy number variations in schizophrenia: critical review and new perspectives on concepts of genetics and disease. Am J Psychiatry 2010, 167(8):899-914.
- [29]Sahoo T, Theisen A, Rosenfeld JA, Lamb AN, Ravnan JB, Schultz RA, Torchia BS, Neill N, Casci I, Bejjani BA, Shaffer LG: Copy number variants of schizophrenia susceptibility loci are associated with a spectrum of speech and developmental delays and behavior problems. Genet Med 2011, 13(10):868-880.
- [30]Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucette WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg CM, Scherer SW, Spinner NB, Stavropoulos DJ, Tepperberg JH, Thorland EC, Vermeesch JR, Waggoner DJ, Watson MS, et al.: Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. Am J Hum Genet 2010, 86(5):749-764.