Genetic drift evolution under vaccination pressure among H5N1 Egyptian isolates

Virology Journal

Magdy F El-Kady³  Manal A Afifi²  Ahmed S Abdel-Moneim¹ 

[1]Department of Microbiology, Virology Division, College of Medicine, Taif University, Al-Taif, Saudi Arabia

[2]Department of Poultry Diseases, Faculty of Veterinary Medicine, Cairo University, Giza, Egypt

[3]Department of Poultry Diseases, Faculty of Veterinary Medicine, Beni-Suef University, Beni-Suef, Egypt

关键词: avian influenza;    drift;    Egypt;    H5N1;   

Others  :  1156579
DOI  :  10.1186/1743-422X-8-283

 received in 2011-03-14, accepted in 2011-06-08,  发布年份 2011

【 授权许可】

   
2011 Abdel-Moneim et al; licensee BioMed Central Ltd.

【 参考文献 】

• [1]World Health Organization, World Organization for Animal Health, Food and Agriculture Organization: H5N1 Evolution Working Group. Toward a unified nomenclature system for highly pathogenic avian influenza virus (H5N1). [http://www.ncbi.nlm.nih.gov/pubmed/18598616] webciteEmerg Infect Dis 2008, 14(7):e1.
• [2]Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly MM, Brown IH, Couacy-Hymann E, De Mia GM, Dung do H, Guercio A, Joannis T, Maken AAS, Osmani A, Padalino I, Saad MD, Savić V, Sengamalay NA, Yingst S, Zaborsky J, Zorman-Rojs O, Ghedin E, Capua I: Genome analysis linking recent European and African influenza (H5N1) viruses. Emerg Infect Dis 2007, 13:713-718.
• [3]Writing Committee of the Second World Health Organization: Consultation on Clinical Aspects of Human Infection with Avian Influenza A (H5N1) Virus: Update on Avian Influenza A (H5N1) Virus Infection in Humans. N Engl J Med 2008, 358:261-273.
• [4]Abdel-Moneim AS, Shany SA, Fereidouni SR, Eid BT, El-Kady MF, Starick E, Harder T, Keil GM: Sequence diversity of the haemagglutinin open reading frame of recent highly pathogenic avian influenza H5N1 isolates from Egypt. Arch Virol 2009, 154:1559-1562.
• [5]Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y: Evolution and ecology of influenza-A viruses. Microbiol Rev 1992, 56:152-179.
• [6]Webster RG, Laver WG, Air GM, Schild GC: Molecular mechanisms of variation in influenza viruses. Nature 1982, 296:115-121.
• [7]Wilson IA, Cox NJ: Structural basis of immune recognition of influenza virus hemagglutinin. Annu Rev Immunol 1990, 8:737-771.
• [8]Stӧhr K: Influenza-WHO cares. Lancet Infect Dis 2002, 2:517.
• [9]Abdelwhab EM, Hafez HM: An overview of the epidemic of highly pathogenic H5N1 avian influenza virus in Egypt: epidemiology and control challenges. [http://www.ncbi.nlm.nih.gov/pubmed/21281550] webciteEpidemiol Infect 2011, 139(5):647-657.
• [10]Ito T, Goto H, Yamamoto E, Tanaka H, Takeuchi M, Kuwayama M, Kawaoka Y, Otsuki K: Generation of a highly pathogenic avian influenza A virus from an avirulent field isolate by passaging in chickens. J Virol 2001, 75:4439-4443.
• [11]Bragstad K, Nielsen L, Fomsgaard A: The evolution of human influenza A viruses from 1999 to 2006: a complete genome study. Virol J 2008, 5:40. BioMed Central Full Text
• [12]Beard CW: Serological procedures. In In American Association of Avian Pathologists. Iowa: Kendall/Hunt Publishing Company; 1989.
• [13]Abdel-Moneim AS, Abdel-Ghany AE, Shany SA: Isolation and characterization of highly pathogenic avian influenza virus subtype H5N1 from donkeys. J Biomed Sci 2010, 14:25.
• [14]Kumar S, Tamura K, Jakobsen IB, Nei M: Molecular evolutionary genetics analysis software. Bioinformatics 2001, 17:1244-1245.
• [15]Gupta R, Jung E, Brunak S: Prediction of N-glycosylation sites in human proteins. [http://www.cbs.dtu.dk/services/NetNGlyc/] webcite 2004.
• [16]Duvvuri VRSK, Duvvuri B, Cuff WR, Wu GE, Wu J: Role of positive selection pressure on the evolution of H5N1 hemagglutinin. Genomics Proteomics and Bioinformatics 2009, 7:47-56.
• [17]Influenza Virus Resource [http://www.ncbi.nlm.nih.gov/genomes/FLU/] webcite 2004.
• [18]Xu X, Subbarao K, Cox NJ, Guo Y: Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology 1999, 261:15-19.
• [19]Kaverin NV, Rudneva IA, Rudneva IA: Epitope mapping of the hemagglutinin molecule of a highly pathogenic H5N1 influenza virus by using monoclonal antibodies. J Virol 2007, 81:12911-12917.
• [20]Li G, Tao S, Wang X: Sequence and epitope analysis of surface proteins of avian influenza H5N1 viruses from Asian patients. Chin Sci Bull 2006, 51:2472-2481.
• [21]Veljkovic V, Veljkovic N, Muller CP, Müller S, Glisic S, Perovic V, Kӧhler H: Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control. BMC Struct Biol 2009, 9:21. BioMed Central Full Text
• [22]Zhou A, Webb G, Zhu X, Steiner DF: Proteolytic processing in the secretory pathway. J Biol Chem 1999, 274:20745-20748.
• [23]Lycett SJ, Ward MJ, Lewis FI, Poon AF, Kosakovsky PSL, Brown AJ: Detection of mammalian virulence determinants in highly pathogenic avian influenza H5N1 viruses: multivariate analysis of published data. J Virol 2009, 83:9901-9910.
• [24]Perdue ML, Suarez DL: Structural features of the avian influenza virus hemagglutinin that influence virulence. Vet Microbiol 2000, 74:77-86.
• [25]Philpott M, Hioe C, Sheerar M, Hinshaw V: Hemagglutinin mutations related to attenuation altered cell tropism of a virulent avian influenza A virus. J Virol 1990, 64:2941-2947.
• [26]Ilyushina NA, Rudneva IA, Gambaryan AS, Tuzikov AB, Bovin NV: Receptor specificity of H5 influenza virus escape mutants. Virus Res 2004, 100:237-241.
• [27]Nielsen M, Lundegaard C, Lund O, Kesmir C: The role of the proteasome in generating cytotoxic T cell epitopes: insights obtained from improved predictions of proteasomal cleavage. Immunogenetics 2005, 57:33-41.
• [28]Lee CW, Senne DA, Suarez DL: Effect of vaccine use in the evolution of Mexican lineage H5N2 avian influenza virus. J Virol 2004, 78:8372-8381.
• [29]Ellis JS, Zambon MC: Combined PCR-heteroduplex mobility assay for detection and differentiation of influenza A viruses from different animal species. J Clin Microbiol 2001, 39:4097-4102.
• [30]Gambaryan A, Tuzikov A, Pazynina G, Bovin N, Balish A, Klimov A: Evolution of the receptor binding phenotype of influenza A (H5) viruses. Virology 2006, 344:432-438.
• [31]Widjaja L, Ilyushina N, Webster RG, Webby RJ: Molecular changes associated with adaptation of human influenza A virus in embryonated chicken eggs. Virology 2006, 350:137-145.
• [32]Wu WL, Chen Y, Wang P, Song W, Lau SY, Rayner JM, Smith GJD, Webster RG, Peiris JSM, Lin T, Xia N, Guan Y, Chen H: Antigenic profile of avian H5N1 viruses in Asia from 2002 to 2007. J Virol 2008, 82:1798-1807.
• [33]Bright RA, Ross TM, Subbarao K, Robinson HL, Katz JM: Impact of glycosylation on the immunogenicity of a DNA-based influenza H5 HA vaccine. Virology 2003, 308:270-278.
• [34]Chen H, Bright RA, Subbarao K, Smith C, Cox NJ, Katz JM, Matsuoka Y: Polygenic virulence factors involved in pathogenesis of 1997 Hong Kong H5N1 influenza viruses in mice. Virus Res 2007, 128:159-163.