Movement Ecology | |
Movement, resting, and attack behaviors of wild pumas are revealed by tri-axial accelerometer measurements | |
Christopher C Wilmers3  Gabriel Elkaim2  Terrie M Williams1  Caleb M Bryce1  Matthew Rutishauser4  Barry Nickel3  Yiwei Wang3  | |
[1] Ecology and Evolutionary Biology Department, University of California, 1156 High Street, Santa Cruz 95064, CA, USA;Computer Engineering Department, Autonomous Systems Lab, University of California, 1156 High Street, Santa Cruz 95064, CA, USA;Environmental Studies Department, Center for Integrated Spatial Research, University of California, 1156 High Street, Santa Cruz 95064, CA, USA;Wildlife Computers, 8345 154th Ave. NE, Redmond 98052, WA, USA | |
关键词: Predation; Random forest; Behavior; Accelerometer; Puma concolor; | |
Others : 1132165 DOI : 10.1186/s40462-015-0030-0 |
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received in 2014-10-26, accepted in 2015-01-12, 发布年份 2015 | |
【 摘 要 】
Background
Accelerometers are useful tools for biologists seeking to gain a deeper understanding of the daily behavior of cryptic species. We describe how we used GPS and tri-axial accelerometer (sampling at 64 Hz) collars to monitor behaviors of free-ranging pumas (Puma concolor), which are difficult or impossible to observe in the wild. We attached collars to twelve pumas in the Santa Cruz Mountains, CA from 2010-2012. By implementing Random Forest models, we classified behaviors in wild pumas based on training data from observations and measurements of captive puma behavior.
Results
We applied these models to accelerometer data collected from wild pumas and identified mobile and non-mobile behaviors in captive animals with an accuracy rate greater than 96%. Accuracy remained above 95% even after downsampling our accelerometer data to 16 Hz. We were further able to predict low-acceleration movement behavior (e.g. walking) and high-acceleration movement behavior (e.g. running) with 93.8% and 92% accuracy, respectively. We had difficulty predicting non-movement behaviors such as feeding and grooming due to the small size of our training dataset. Lastly, we used model-predicted and field-verified predation events to quantify acceleration characteristics of puma attacks on large prey.
Conclusion
These results demonstrate that accelerometers are useful tools for classifying the behaviors of cryptic medium and large-sized terrestrial mammals in their natural habitats and can help scientists gain deeper insight into their fine-scale behavioral patterns. We also show how accelerometer measurements can provide novel insights on the energetics and predation behavior of wild animals. Lastly we discuss the conservation implications of identifying these behavioral patterns in free-ranging species as natural and anthropogenic landscape features influence animal energy allocation and habitat use.
【 授权许可】
2015 Wang et al.; licensee BioMed Central.
【 预 览 】
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【 参考文献 】
- [1]Wilson RP, Shepard ELC, Liebsch N: Prying into the intimate details of animal lives: use of a daily diary on animals. Endang Species Res 2008, 4:123-127.
- [2]Cagnacci F, Boitani L, Powell RA, Boyce MS: Animal ecology meets GPS-based radiotelemetry: a perfect storm of opportunities and challenges. Philos Trans R Soc Lond B Biol Sci. 2010, 365:2157-2162.
- [3]Wilmers CC, Wang Y, Nickel B, Houghtaling P, Shakeri Y, Allen M, et al.: Scale dependent behavioral responses to human development by a large predator, the puma. PLoS One. 2013, 8:e60590.
- [4]Cooke SJ: Biotelemetry and biologging in endangered species research and animal conservation: relevance to regional, national, and IUCN Red List threat assessments. Endang Species Res 2008, 4:165-185.
- [5]Shamoun-Baranes J, Bom R, van Loon EE, Ens BJ, Oosterbeek K, Bouten W: From sensor data to animal behaviour: an oystercatcher example. PLoS One. 2012, 7:e37997.
- [6]Nathan R, Spiegel O, Fortmann-Roe S, Harel R, Wikelski M, Getz WM: Using tri-axial acceleration data to identify behavioral modes of free-ranging animals: general concepts and tools illustrated for griffon vultures. J Exp Biol. 2012, 215:986-996.
- [7]Shepard ELC, Wilson RP, Quintana F, Laich AG, Liebsch N, Albareda DA, et al.: Identification of animal movement patterns using tri-axial accelerometry. Endang Species Res 2008, 10:47-60.
- [8]Brown DD, Kays R, Wikelski M, Wilson R, Klimley AP: Observing the unwatchable through acceleration logging of animal behavior. Animal Biotelemetry. 2013, 1:20. BioMed Central Full Text
- [9]Wilson AM, Lowe JC, Roskilly K, Hudson PE, Golabek KA, McNutt JW: Locomotion dynamics of hunting in wild cheetahs. Nature. 2013, 498:185-189.
- [10]Grunewalder S, Broekhuis F, Macdonald DW, Wilson AM, McNutt JW, Shawe-Taylor J, et al.: Movement Activity Based Classification of Animal Behaviour with an Application to Data from Cheetah (Acinonyx jubatus). Plos One. 2012, 7:e49120.
- [11]Logan KA, Sweanor LL: Desert Puma: Evolutionary Ecology and Conservation of an Enduring Carnivore. Island Press, Washington D.C.; 2001.
- [12]Watanabe S, Izawa M, Kato A, Ropert-Coudert Y, Naito Y: A new technique for monitoring the detailed behaviour of terrestrial animals: A case study with the domestic cat. Appl Anim Behav Sci. 2005, 94:117-131.
- [13]Wilson RP, White CR, Quintana F, Halsey LG, Liebsch N, Martin GR, et al.: Moving towards acceleration for estimates of activity-specific metabolic rate in free-living animals: the case of the cormorant. J Anim Ecol. 2006, 75:1081-1090.
- [14]Gleiss AC, Wilson RP, Shepard ELC: Making overall dynamic body acceleration work: on the theory of acceleration as a proxy for energy expenditure. Methods Ecol Evol. 2011, 2:23-33.
- [15]Williams TM, Wolfe LE, Davis T, Kendall T, Richter B, Wang Y, et al.: Instantaneous energetics of puma kills reveal advantage of felid sneak attacks. Science. 2014, 346:81-85.
- [16]Elliott KH, Chivers LS, Bessey L, Gaston AJ, Hatch SA, Kato A, et al.: Windscapes shape seabird instantaneous energy costs but adult behavior buffers impact on offspring. Movement Ecology. 2014, 2:1-15. BioMed Central Full Text
- [17]Brown DD, LaPoint S, Kays R, Heidrich W, Kümmeth F, Wikelski M: Accelerometer-informed GPS telemetry: reducing the trade-off between resolution and longevity. Wildl Soc Bull. 2012, 36:139-146.
- [18]Loyd KT, Hernandez SM, Carroll JP, Abernathy KJ, Marshall GJ: Quantifying free-roaming domestic cat predation using animal-bornevideo cameras. Biol Conserv. 2013, 160:183-189.
- [19]Williams TM, Fuiman LA, Horning M, Davis RW: The cost of foraging by a marine predator, the Weddell seal Leptonychotes weddellii: pricing by the stroke. J Exp Biol. 2004, 207:973-982.
- [20]Allen ML, Elbroch LM, Wilmers CC, Wittmer HU: Trophic facilitation or limitation? Comparative effects of pumas and black bears on the scavenger community. PloS One. 2014, 9:10.
- [21]Laundré JW: How large predators manage the cost of hunting. Science. 2014, 346:33-34.
- [22]Kertson BN, Spencer RD, Marzluff JM, Hepinstall-Cymerman J, Grue CE: Cougar space use and movements in the wildland-urban landscape of western Washington. Ecol Appl. 2011, 21:2866-2881.
- [23]Dickson BG, Jenness JS, Beier P: Influence of vegetation, topography, and roads on cougar movement in southern California. J Wildl Manage. 2005, 69:264-276.
- [24]Green JA, Halsey LG, Wilson RP, Frappell PB: Estimating energy expenditure of animals using the accelerometry technique: activity, inactivity and comparison with the heart-rate technique. J Exp Biol. 2009, 212:471-482.
- [25]Shepard ELC, Wilson RP, Rees WG, Grundy E, Lambertucci SA, Vosper SB: Energy landscapes shape animal movement ecology. Am Nat. 2013, 182:298-312.
- [26]Cougar: Ecology and Conservation. University of Chicago Press, Chicago; 2009.
- [27]Rutishauser M, Petkov V, Boice J, Obraczka K, Mantey P, Williams TM, et al.: CARNIVORE: A Disruption-Tolerant System for Studying Wildlife. EURASIP J Wirel Commun Netw. 2011, 2011:968046.
- [28]Gebre-Egziabher D, Elkaim GH, Powel JD, Parkinson BW: Calibration of strapdown magnetometers in magnetic field domain. J Aerosp Eng. 2006, 19:87-102.
- [29]Shepard ELC, Wilson RP, Halsey LG, Quintana F, Laich AG, Gleiss AC, et al.: Derivation of body motion via appropriate smoothing of acceleration data. Aquat Biol. 2009, 4:235-241.
- [30]Breiman L: Random forests. Machine Learning. 2001, 45:5-32.
- [31]Cutler DR, Edwards TC, Beard KH, Cutler A, Hess KT: Random forests for classification in ecology. Ecology. 2007, 88:2783-2792.
- [32]Strobl C, Malley J, Tutz G: An introduction to recursive partitioning: rationale, application, and characteristics of classification and regression trees, bagging, and random forests. Psychol Methods. 2009, 14:323-348.
- [33]Breiman L, Friedman JH, Olshen RA, Stone CJ: Classification and regression trees. Wadsworth and Brooks/Cole, Monterey, California, USA; 1984.
- [34]Hothorn T, Buehlmann P, Dudoit S, Molinaro A, Van Der Laan M: Survival ensembles. Biostatistics. 2006, 7:355-373.
- [35]R Development Core Team: R: A language and environment for statistical computing. 302nd edition. R Foundation for Statistical Computing, Vienna, Austria; 2013.
- [36]Bates D, Maechler M, Bolker B: lme4: linear mixed-effects models using Eigen and S4. R package version 1.1-7, 2013 [http://CRAN.R-project.org/package=lme4]