期刊论文详细信息
Virology Journal
Gibson assembly: an easy way to clone potyviral full-length infectious cDNA clones expressing an ectopic VPg
Sylvie German-Retana1  Marie-Christine Houvenaghel1  Amandine Bordat1 
[1] Université de Bordeaux, UMR 1332 de Biologie du Fruit et Pathologie, CS 20032, Villenave d’Ornon, 33882, France
关键词: Improved cloning;    VPg;    Potyvirus;    Gibson assembly;    Full-length infectious clone;   
Others  :  1224925
DOI  :  10.1186/s12985-015-0315-3
 received in 2015-04-07, accepted in 2015-05-29,  发布年份 2015
PDF
【 摘 要 】

Background

Approaches to simplify and accelerate the construction of full-length infectious cDNA clones for plant potyviruses have been described, based on cloning strategies involving in vitro ligation or homologous recombination in yeast. In the present study, we developed a faster and more efficient in vitro recombination system using Gibson assembly (GA), to engineer a Lettuce mosaic virus (LMV) infectious clone expressing an ectopic mcherry-tagged VPg (Viral protein genome-linked) for in planta subcellular localization of the viral protein in an infection context.

Methods

Three overlapping long distance PCR fragments were amplified and assembled in a single-step process based on in vitro recombination (Gibson assembly). The resulting 17.5 kbp recombinant plasmids (LMVmchVPg_Ec) were inoculated by biolistic on lettuce plants and then propagated mechanically on Nicotiana benthamiana. Confocal microscopy was used to analyze the subcellular localization of the ectopically expressed mcherry-VPg fusion protein.

Results

The Gibson assembly allowed the cloning of the expected plasmids without any deletion. All the inoculated plants displayed symptoms characteristic of LMV infection. The majority of the mcherry fluorescent signal observed using confocal microscopy was located in the nucleus and nucleolus as expected for a potyviral VPg.

Conclusions

This is the first report of the use of the Gibson assembly method to construct full-length infectious cDNA clones of a potyvirus genome. This is also the first description of the ectopic expression of a tagged version of a potyviral VPg without affecting the viability of the recombinant potyvirus.

【 授权许可】

   
2015 Bordat et al.

【 预 览 】
附件列表
Files Size Format View
20150915115402874.pdf 1641KB PDF download
Fig. 5. 46KB Image download
Fig. 4. 38KB Image download
Fig. 3. 66KB Image download
Fig. 2. 26KB Image download
Fig. 1. 55KB Image download
【 图 表 】

Fig. 1.

Fig. 2.

Fig. 3.

Fig. 4.

Fig. 5.

【 参考文献 】
  • [1]Ahlquist P, Janda M. cDNA cloning and in vitro transcription of the complete brome mosaic virus genome. Mol Cell Biol. 1984; 4:2876-82.
  • [2]Boyer J, Haenni A. Infectious transcripts and cDNA clones of RNA viruses. Virology. 1994; 198:415-26.
  • [3]Youssef F, Marais A, Faure C, Gentit P, Candresse T. Strategies to facilitate the development of uncloned or cloned infectious full-length viral cDNAs: Apple chlorotic leaf spot virus as a case study. Virol J. 2011; 8:488. BioMed Central Full Text
  • [4]Junqueira BRT, Nicolini C, Lucinda N, Orílio AF, Nagata T. A simplified approach to construct infectious cDNA clones of a tobamovirus in a binary vector. J Virol Methods. 2014; 198:32-6.
  • [5]Desbiez C, Chandeysson C, Lecoq H, Moury B. A simple, rapid and efficient way to obtain infectious clones of potyviruses. J Virol Methods. 2012; 183:94-7.
  • [6]Patron NJ. DNA assembly for plant biology: techniques and tools. Curr Opin Plant Biol. 2014; 19C:14-9.
  • [7]Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, Zaveri J et al.. Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science. 2008; 319:1215-20.
  • [8]Gibson DG, Smith HO, Hutchison CA, Venter JC, Merryman C. Chemical synthesis of the mouse mitochondrial genome. Nat Methods. 2010; 7:901-3.
  • [9]Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA, Smith HO. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods. 2009; 6:343-5.
  • [10]Siridechadilok B, Gomutsukhavadee M, Sawaengpol T, Sangiambut S, Puttikhunt C, Chin-Inmanu K et al.. A Simplified Positive-Sense-RNA Virus Construction Approach That Enhances Analysis Throughput. J Virol. 2013; 87:12667-74.
  • [11]Vandergaast R, Hoover LI, Zheng K, Fredericksen BL. Generation of west nile virus infectious clones containing amino Acid insertions between capsid and capsid anchor. Viruses. 2014; 6:1637-53.
  • [12]Suhardiman M, Kramyu J, Narkpuk J, Jongkaewwattana A, Wanasen N. Generation of porcine reproductive and respiratory syndrome virus by in vitro assembly of viral genomic cDNA fragments. Virus Res. 2015; 195:1-8.
  • [13]Wimmer E, Mueller S, Tumpey TM, Taubenberger JK. Synthetic viruses: a new opportunity to understand and prevent viral disease. Nat Biotechnol. 2009; 27:1163-72.
  • [14]Cooper B. Proof by synthesis of Tobacco mosaic virus. Genome Biol. 2014; 15:R67. BioMed Central Full Text
  • [15]Lovato A, Faoro F, Gambino G, Maffi D, Bracale M, Polverari A et al.. Construction of a synthetic infectious cDNA clone of Grapevine Algerian latent virus (GALV-Nf) and its biological activity in Nicotiana benthamiana and grapevine plants. Virol J. 2014; 11:186. BioMed Central Full Text
  • [16]Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valkonen JPT. Family potyviridae. In: AMQ King, MJ Adams, EB Carstens & EJ Lefkowitz, editors. Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses. 2011, 1069–1089.
  • [17]Revers F, Garcia JA. Molecular Biology of Potyviruses. Advances in Virus Research Chapter three. 2015; 92:101-99.
  • [18]Wang A, Krishnaswamy S. Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement. Mol Plant Pathol. 2012; 13(7):795-803.
  • [19]Nicaise V, German-retana S, Sanjua R, Dubrana M, Mazier M, Maisonneuve B et al.. The Eukaryotic Translation Initiation Factor 4E Controls Lettuce Susceptibility to the Potyvirus. Plant Physiol. 2003; 132:1272-82.
  • [20]German-Retana S, Walter J, Doublet B, Roudet-Tavert G, Nicaise V, Lecampion C et al.. Mutational analysis of plant cap-binding protein eIF4E reveals key amino acids involved in biochemical functions and potyvirus infection. J Virol. 2008; 82:7601-12.
  • [21]German-Retana S, Walter J, Le Gall O. Lettuce mosaic virus: From pathogen diversity to host interactors. Mol Plant Pathol. 2008; 9:127-36.
  • [22]Abdul-Razzak A, Guiraud T, Peypelut M, Walter J, Houvenaghel MC, Candresse T et al.. Involvement of the cylindrical inclusion (CI) protein in the overcoming of an eIF4E-mediated resistance against Lettuce mosaic potyvirus. Mol Plant Pathol. 2009; 10:109-13.
  • [23]Sorel M, Svanella-Dumas L, Candresse T, Acelin G, Pitarch A, Houvenaghel M et al.. Key mutations in the Cylindrical Inclusion involved in Lettuce mosaic virus adaptation to eIF4E-mediated resistance in lettuce. Mol Plant-Microbe Interact. 2014; 9:1014-24.
  • [24]Tavert-Roudet G, Abdul-Razzak A, Doublet B, Walter J, Delaunay T, German-Retana S et al.. The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E. J Gen Virol. 2012; 93(1):184-93.
  • [25]German-Retana S, Candresse T, Alias E, Delbos RP, Le Gall O. Effects of green fluorescent protein or beta-glucuronidase tagging on the accumulation and pathogenicity of a resistance-breaking Lettuce mosaic virus isolate in susceptible and resistant lettuce cultivars. Mol Plant Microbe Interact. 2000; 13:316-24.
  • [26]German-Retana S, Redondo E, Tavert-Roudet G, Le Gall O, Candresse T. Introduction of a NIa proteinase cleavage site between the reporter gene and HC-Pro only partially restores the biological properties of GUS- or GFP-tagged LMV. Virus Res. 2003; 98:151-62.
  • [27]Jiang J, Laliberté JF. The genome-linked protein VPg of plant viruses - A protein with many partners. Curr Opin Virol. 2011; 1:347-54.
  • [28]Rajamäki M-L, Valkonen JPT. Control of nuclear and nucleolar localization of nuclear inclusion protein a of picorna-like Potato virus A in Nicotiana species. Plant Cell. 2009; 21:2485-502.
  • [29]Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D et al.. The eukaryotic linear motif resource ELM: 10 years and counting. Nucleic Acids Res. 2014; 42:1-8.
  • [30]Redondo E, Krause-Sakate R, Yang SJ, Lot H, Le Gall O, Candresse T. Lettuce mosaic virus pathogenicity determinants in susceptible and tolerant lettuce cultivars map to different regions of the viral genome. Mol Plant Microbe Interact. 2001; 14:804-10.
  • [31]Toth IK, Hyman LJ, Bertheau Y, Fréchon D. DNA amplification by polymerase chain reaction (PCR). In: Methods for the Detection and Quantification of Erwinia carotovora subsp. atroseptica (Pectobacterium carotovorum subsp. atrosepticum) on Potatoes: A Laboratory Manual. Perombelon MCM, Wolf JM, editors. Scottish Crop Research Institute Occasional Publication Number 10, Invergowrie, Scotland; 2002: p.44-65. 1
  文献评价指标  
  下载次数:28次 浏览次数:5次