Virology Journal | |
BRCA1 functions as a novel transcriptional cofactor in HIV-1 infection | |
Kylene Kehn-Hall3  Yuntao Wu3  Jia Guo3  Kristoffer Valerie1  Seth M Dever2  Alan Baer3  Beatrix W Meltzer3  Irene Guendel3  | |
[1] Department of Radiation Oncology, Virginia Commonwealth University, Richmond 23298, VA, USA;Department of Pharmacology and Toxicology, Virginia Commonwealth University, Richmond 23298, VA, USA;National Center for Biodefense & Infectious Diseases, School of Systems Biology, George Mason University, Biomedical Research Lab, 10650 Pyramid Place, MS 1J5, Manassas 20110, VA, USA | |
关键词: Post-translational modification; Phosphorylation; ATM; HIV-1; BRCA1; Viral transcription; Small molecule inhibitor; Antiviral; | |
Others : 1145089 DOI : 10.1186/s12985-015-0266-8 |
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received in 2014-09-25, accepted in 2015-02-14, 发布年份 2015 |
【 摘 要 】
Background
Viruses have naturally evolved elegant strategies to manipulate the host’s cellular machinery, including ways to hijack cellular DNA repair proteins to aid in their own replication. Retroviruses induce DNA damage through integration of their genome into host DNA. DNA damage signaling proteins including ATR, ATM and BRCA1 contribute to multiple steps in the HIV-1 life cycle, including integration and Vpr-induced G2/M arrest. However, there have been no studies to date regarding the role of BRCA1 in HIV-1 transcription.
Methods
Here we performed various transcriptional analyses to assess the role of BRCA1 in HIV-1 transcription by overexpression, selective depletion, and treatment with small molecule inhibitors. We examined association of Tat and BRCA1 through in vitro binding assays, as well as BRCA1-LTR association by chromatin immunoprecipitation.
Results
BRCA1 was found to be important for viral transcription as cells that lack BRCA1 displayed severely reduced HIV-1 Tat-dependent transcription, and gain or loss-of-function studies resulted in enhanced or decreased transcription. Moreover, Tat was detected in complex with BRCA1 aa504-802. Small molecule inhibition of BRCA1 phosphorylation effector kinases, ATR and ATM, decreased Tat-dependent transcription, whereas a Chk2 inhibitor showed no effect. Furthermore, BRCA1 was found at the viral promoter and treatment with curcumin and ATM inhibitors decreased BRCA1 LTR occupancy. Importantly, these findings were validated in a highly relevant model of HIV infection and are indicative of BRCA1 phosphorylation affecting Tat-dependent transcription.
Conclusions
BRCA1 presence at the HIV-1 promoter highlights a novel function of the multifaceted protein in HIV-1 infection. The BRCA1 pathway or enzymes that phosphorylate BRCA1 could potentially be used as complementary host-based treatment for combined antiretroviral therapy, as there are multiple potent ATM inhibitors in development as chemotherapeutics.
【 授权许可】
2015 Guendel et al.; licensee BioMed Central.
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【 参考文献 】
- [1]Gatignol A: Transcription of HIV: Tat and cellular chromatin. Adv Pharmacol 2007, 55:137-59.
- [2]Peng J, Zhu Y, Milton JT, Price DH: Identification of multiple cyclin subunits of human P-TEFb. Genes Dev 1998, 12:755-62.
- [3]Fujinaga K, Cujec TP, Peng J, Garriga J, Price DH, Grana X, et al.: The ability of positive transcription elongation factor B to transactivate human immunodeficiency virus transcription depends on a functional kinase domain, cyclin T1, and Tat. J Virol 1998, 72:7154-9.
- [4]Herrmann CH, Rice AP: Lentivirus Tat proteins specifically associate with a cellular protein kinase, TAK, that hyperphosphorylates the carboxyl-terminal domain of the large subunit of RNA polymerase II: candidate for a Tat cofactor. J Virol 1995, 69:1612-20.
- [5]Laspia MF, Rice AP, Mathews MB: HIV-1 Tat protein increases transcriptional initiation and stabilizes elongation. Cell 1989, 59:283-92.
- [6]Nabel G, Baltimore D: An inducible transcription factor activates expression of human immunodeficiency virus in T cells. Nature 1987, 326:711-3.
- [7]Sobhian B, Laguette N, Yatim A, Nakamura M, Levy Y, Kiernan R, et al.: HIV-1 Tat assembles a multifunctional transcription elongation complex and stably associates with the 7SK snRNP. Mol Cell 2010, 38:439-51.
- [8]Garber ME, Wei P, Jones KA: HIV-1 Tat interacts with cyclin T1 to direct the P-TEFb CTD kinase complex to TAR RNA. Cold Spring Harb Symp Quant Biol 1998, 63:371-80.
- [9]Wei P, Garber ME, Fang SM, Fischer WH, Jones KA: A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 1998, 92:451-62.
- [10]Zhou M, Deng L, Lacoste V, Park HU, Pumfery A, Kashanchi F, et al.: Coordination of transcription factor phosphorylation and histone methylation by the P-TEFb kinase during human immunodeficiency virus type 1 transcription. J Virol 2004, 78:13522-33.
- [11]Andersen JL, Zimmerman ES, DeHart JL, Murala S, Ardon O, Blackett J, et al.: ATR and GADD45alpha mediate HIV-1 Vpr-induced apoptosis. Cell Death Differ 2005, 12:326-34.
- [12]Coberley CR, Kohler JJ, Brown JN, Oshier JT, Baker HV, Popp MP, et al.: Impact on genetic networks in human macrophages by a CCR5 strain of human immunodeficiency virus type 1. J Virol 2004, 78:11477-86.
- [13]Zimmerman ES, Chen J, Andersen JL, Ardon O, Dehart JL, Blackett J, et al.: Human immunodeficiency virus type 1 Vpr-mediated G2 arrest requires Rad17 and Hus1 and induces nuclear BRCA1 and gamma-H2AX focus formation. Mol Cell Biol 2004, 24:9286-94.
- [14]Yang YX, Guen V, Richard J, Cohen EA, Berthoux L: Cell context-dependent involvement of ATR in early stages of retroviral replication. Virology 2010, 396:272-9.
- [15]Dimitrov SD, Lu D, Naetar N, Hu Y, Pathania S, Kanellopoulou C, et al.: Physiological modulation of endogenous BRCA1 p220 abundance suppresses DNA damage during the cell cycle. Genes Dev 2013, 27:2274-91.
- [16]De Siervi A, De Luca P, Byun JS, Di LJ, Fufa T, Haggerty CM, et al.: Transcriptional autoregulation by BRCA1. Cancer Res 2010, 70:532-42.
- [17]Monteiro AN, August A, Hanafusa H: Evidence for a transcriptional activation function of BRCA1 C-terminal region. Proc Natl Acad Sci U S A 1996, 93:13595-9.
- [18]Glover JN, Williams RS, Lee MS: Interactions between BRCT repeats and phosphoproteins: tangled up in two. Trends Biochem Sci 2004, 29:579-85.
- [19]Scully R, Anderson SF, Chao DM, Wei W, Ye L, Young RA, et al.: BRCA1 is a component of the RNA polymerase II holoenzyme. Proc Natl Acad Sci U S A 1997, 94:5605-10.
- [20]Krum SA, Miranda GA, Lin C, Lane TF: BRCA1 associates with processive RNA polymerase II. J Biol Chem 2003, 278:52012-20.
- [21]Anderson SF, Schlegel BP, Nakajima T, Wolpin ES, Parvin JD: BRCA1 protein is linked to the RNA polymerase II holoenzyme complex via RNA helicase A. Nat Genet 1998, 19:254-6.
- [22]Pao GM, Janknecht R, Ruffner H, Hunter T, Verma IM: CBP/p300 interact with and function as transcriptional coactivators of BRCA1. Proc Natl Acad Sci U S A 2000, 97:1020-5.
- [23]Rosen EM, Fan S, Pestell RG, Goldberg ID: BRCA1 gene in breast cancer. J Cell Physiol 2003, 196:19-41.
- [24]Harkin DP, Bean JM, Miklos D, Song YH, Truong VB, Englert C, et al.: Induction of GADD45 and JNK/SAPK-dependent apoptosis following inducible expression of BRCA1. Cell 1999, 97:575-86.
- [25]Jin S, Zhao H, Fan F, Blanck P, Fan W, Colchagie AB, et al.: BRCA1 activation of the GADD45 promoter. Oncogene 2000, 19:4050-7.
- [26]Ouchi T, Monteiro AN, August A, Aaronson SA, Hanafusa H: BRCA1 regulates p53-dependent gene expression. Proc Natl Acad Sci U S A 1998, 95:2302-6.
- [27]Somasundaram K: Breast cancer gene 1 (BRCA1): role in cell cycle regulation and DNA repair–perhaps through transcription. J Cell Biochem 2003, 88:1084-91.
- [28]Somasundaram K, Zhang H, Zeng YX, Houvras Y, Peng Y, Zhang H, et al.: Arrest of the cell cycle by the tumour-suppressor BRCA1 requires the CDK-inhibitor p21WAF1/CiP1. Nature 1997, 389:187-90.
- [29]Williamson EA, Dadmanesh F, Koeffler HP: BRCA1 transactivates the cyclin-dependent kinase inhibitor p27(Kip1). Oncogene 2002, 21:3199-206.
- [30]Zhang H, Somasundaram K, Peng Y, Tian H, Zhang H, Bi D, et al.: BRCA1 physically associates with p53 and stimulates its transcriptional activity. Oncogene 1998, 16:1713-21.
- [31]Cabart P, Chew HK, Murphy S: BRCA1 cooperates with NUFIP and P-TEFb to activate transcription by RNA polymerase II. Oncogene 2004, 23:5316-29.
- [32]Bochar DA, Wang L, Beniya H, Kinev A, Xue Y, Lane WS, et al.: BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer. Cell 2000, 102:257-65.
- [33]Harte MT, O’Brien GJ, Ryan NM, Gorski JJ, Savage KI, Crawford NT, et al.: BRD7, a subunit of SWI/SNF complexes, binds directly to BRCA1 and regulates BRCA1-dependent transcription. Cancer Res 2010, 70:2538-47.
- [34]Xu Y, Sun Y, Jiang X, Ayrapetov MK, Moskwa P, Yang S, et al.: The p400 ATPase regulates nucleosome stability and chromatin ubiquitination during DNA repair. J Cell Biol 2010, 191:31-43.
- [35]Zhang L, Chen H, Gong M, Gong F: The chromatin remodeling protein BRG1 modulates BRCA1 response to UV irradiation by regulating ATR/ATM activation. Front Oncol 2013, 3:7.
- [36]Tu Z, Aird KM, Zhang R: Chromatin remodeling, BRCA1, SAHF and cellular senescence. Cell Cycle 2013, 12:1653-4.
- [37]Miki Y, Swensen J, Shattuck-Eidens D, Futreal PA, Harshman K, Tavtigian S, et al.: A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1. Science 1994, 266:66-71.
- [38]Kawai S, Amano A: BRCA1 regulates microRNA biogenesis via the DROSHA microprocessor complex. J Cell Biol 2012, 197:201-8.
- [39]Yarden RI, Brody LC: BRCA1 interacts with components of the histone deacetylase complex. Proc Natl Acad Sci U S A 1999, 96:4983-8.
- [40]DelloRusso C, Welcsh PL, Wang W, Garcia RL, King MC, Swisher EM: Functional characterization of a novel BRCA1-null ovarian cancer cell line in response to ionizing radiation. Mol Cancer Res 2007, 5:35-45.
- [41]Romani B, Engelbrecht S, Glashoff RH: Functions of Tat: the versatile protein of human immunodeficiency virus type 1. J Gen Virol 2010, 91:1-12.
- [42]Frankel AD, Bredt DS, Pabo CO: Tat protein from human immunodeficiency virus forms a metal-linked dimer. Science 1988, 240:70-3.
- [43]Huen MS, Sy SM, Chen J: BRCA1 and its toolbox for the maintenance of genome integrity. Nat Rev Mol Cell Biol 2010, 11:138-48.
- [44]Kashanchi F, Agbottah ET, Pise-Masison CA, Mahieux R, Duvall J, Kumar A, et al.: Cell cycle-regulated transcription by the human immunodeficiency virus type 1 Tat transactivator. J Virol 2000, 74:652-60.
- [45]Ogiwara H, Ui A, Shiotani B, Zou L, Yasui A, Kohno T: Curcumin suppresses multiple DNA damage response pathways and has potency as a sensitizer to PARP inhibitor. Carcinogenesis 2013, 34:2486-97.
- [46]Ji Z: Targeting DNA damage and repair by curcumin. Breast Cancer : Basic and Clin Res 2010, 4:1-3.
- [47]Narayanan A, Kehn-Hall K, Senina S, Lundberg L, Van Duyne R, Guendel I, et al.: Curcumin inhibits Rift Valley fever virus replication in human cells. J Biol Chem 2012, 287:33198-214.
- [48]Bansal Y, Silakari O: Multifunctional compounds: Smart molecules for multifactorial diseases. Eur J Med Chem 2014, 76C:31-42.
- [49]Bhullar KS, Jha A, Youssef D, Rupasinghe HP: Curcumin and its carbocyclic analogs: structure-activity in relation to antioxidant and selected biological properties. Molecules 2013, 18:5389-404.
- [50]Rowe DL, Ozbay T, O’Regan RM, Nahta R: Modulation of the BRCA1 Protein and Induction of Apoptosis in Triple Negative Breast Cancer Cell Lines by the Polyphenolic Compound Curcumin. Breast Cancer : Basic and Clin Res 2009, 3:61-75.
- [51]Gandapu U, Chaitanya RK, Kishore G, Reddy RC, Kondapi AK: Curcumin-loaded apotransferrin nanoparticles provide efficient cellular uptake and effectively inhibit HIV-1 replication in vitro. PLoS One 2011, 6:e23388.
- [52]Guo L, Xing Y, Pan R, Jiang M, Gong Z, Lin L, et al.: Curcumin protects microglia and primary rat cortical neurons against HIV-1 gp120-mediated inflammation and apoptosis. PLoS One 2013, 8:e70565.
- [53]Tang H, Lu D, Pan R, Qin X, Xiong H, Dong J: Curcumin improves spatial memory impairment induced by human immunodeficiency virus type 1 glycoprotein 120 V3 loop peptide in rats. Life Sci 2009, 85:1-10.
- [54]Riva DA, Fernandez-Larrosa PN, Dolcini GL, Martinez-Peralta LA, Coulombie FC, Mersich SE: Two immunomodulators, curcumin and sulfasalazine, enhance IDV antiretroviral activity in HIV-1 persistently infected cells. Arch Virol 2008, 153:561-5.
- [55]Zhang HS, Ruan Z, Sang WW: HDAC1/NFkappaB pathway is involved in curcumin inhibiting of Tat-mediated long terminal repeat transactivation. J Cell Physiol 2011, 226:3385-91.
- [56]Traven A, Heierhorst J: SQ/TQ cluster domains: concentrated ATM/ATR kinase phosphorylation site regions in DNA-damage-response proteins. Bioessays 2005, 27:397-407.
- [57]Tibbetts RS, Cortez D, Brumbaugh KM, Scully R, Livingston D, Elledge SJ, et al.: Functional interactions between BRCA1 and the checkpoint kinase ATR during genotoxic stress. Genes Dev 2000, 14:2989-3002.
- [58]Cortez D, Wang Y, Qin J, Elledge SJ: Requirement of ATM-dependent phosphorylation of brca1 in the DNA damage response to double-strand breaks. Science 1999, 286:1162-6.
- [59]Gatei M, Scott SP, Filippovitch I, Soronika N, Lavin MF, Weber B, et al.: Role for ATM in DNA damage-induced phosphorylation of BRCA1. Cancer Res 2000, 60:3299-304.
- [60]Lee JS, Collins KM, Brown AL, Lee CH, Chung JH: hCds1-mediated phosphorylation of BRCA1 regulates the DNA damage response. Nature 2000, 404:201-4.
- [61]Valerie K, Delers A, Bruck C, Thiriart C, Rosenberg H, Debouck C, et al.: Activation of human immunodeficiency virus type 1 by DNA damage in human cells. Nature 1988, 333:78-81.
- [62]Zhou BB, Chaturvedi P, Spring K, Scott SP, Johanson RA, Mishra R, et al.: Caffeine abolishes the mammalian G(2)/M DNA damage checkpoint by inhibiting ataxia-telangiectasia-mutated kinase activity. J Biol Chem 2000, 275:10342-8.
- [63]Hickson I, Zhao Y, Richardson CJ, Green SJ, Martin NM, Orr AI, et al.: Identification and characterization of a novel and specific inhibitor of the ataxia-telangiectasia mutated kinase ATM. Cancer Res 2004, 64:9152-9.
- [64]Zhang J, Willers H, Feng Z, Ghosh JC, Kim S, Weaver DT, et al.: Chk2 phosphorylation of BRCA1 regulates DNA double-strand break repair. Mol Cell Biol 2004, 24:708-18.
- [65]Nunnari G, Argyris E, Fang J, Mehlman KE, Pomerantz RJ, Daniel R: Inhibition of HIV-1 replication by caffeine and caffeine-related methylxanthines. Virology 2005, 335:177-84.
- [66]Ariumi Y, Turelli P, Masutani M, Trono D: DNA damage sensors ATM, ATR, DNA-PKcs, and PARP-1 are dispensable for human immunodeficiency virus type 1 integration. J Virol 2005, 79:2973-8.
- [67]Lau A, Swinbank KM, Ahmed PS, Taylor DL, Jackson SP, Smith GC, et al.: Suppression of HIV-1 infection by a small molecule inhibitor of the ATM kinase. Nat Cell Biol 2005, 7:493-500.
- [68]Koyama T, Sun B, Tokunaga K, Tatsumi M, Ishizaka Y: DNA damage enhances integration of HIV-1 into macrophages by overcoming integrase inhibition. Retrovirology 2013, 10:21. BioMed Central Full Text
- [69]Napolitano G, Amente S, Castiglia V, Gargano B, Ruda V, Darzacq X, et al.: Caffeine prevents transcription inhibition and P-TEFb/7SK dissociation following UV-induced DNA damage. PLoS One 2010, 5:e11245.
- [70]Derdeyn CA, Decker JM, Sfakianos JN, Wu X, O’Brien WA, Ratner L, et al.: Sensitivity of human immunodeficiency virus type 1 to the fusion inhibitor T-20 is modulated by coreceptor specificity defined by the V3 loop of gp120. J Virol 2000, 74:8358-67.
- [71]Wei X, Decker JM, Liu H, Zhang Z, Arani RB, Kilby JM, et al.: Emergence of resistant human immunodeficiency virus type 1 in patients receiving fusion inhibitor (T-20) monotherapy. Antimicrob Agents Chemother 2002, 46:1896-905.
- [72]Scully R, Ganesan S, Vlasakova K, Chen J, Socolovsky M, Livingston DM: Genetic analysis of BRCA1 function in a defined tumor cell line. Mol Cell 1999, 4:1093-9.
- [73]Dever SM, Golding SE, Rosenberg E, Adams BR, Idowu MO, Quillin JM, et al.: Mutations in the BRCT binding site of BRCA1 result in hyper-recombination. Aging 2011, 3:515-32.
- [74]Yee JK, Miyanohara A, LaPorte P, Bouic K, Burns JC, Friedmann T: A general method for the generation of high-titer, pantropic retroviral vectors: highly efficient infection of primary hepatocytes. Proc Natl Acad Sci U S A 1994, 91:9564-8.
- [75]Naldini L, Blomer U, Gallay P, Ory D, Mulligan R, Gage FH, et al.: In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vector. Science 1996, 272:263-7.
- [76]Wang Z, Tang Z, Zheng Y, Yu D, Spear M, Iyer SR, et al.: Development of a nonintegrating Rev-dependent lentiviral vector carrying diphtheria toxin A chain and human TRAF6 to target HIV reservoirs. Gene Ther 2010, 17:1063-76.
- [77]Young J, Tang Z, Yu Q, Yu D, Wu Y: Selective killing of HIV-1-positive macrophages and T cells by the Rev-dependent lentivirus carrying anthrolysin O from Bacillus anthracis. Retrovirology 2008, 5:36. BioMed Central Full Text
- [78]Guendel I, Carpio L, Pedati C, Schwartz A, Teal C, Kashanchi F, et al.: Methylation of the tumor suppressor protein, BRCA1, influences its transcriptional cofactor function. PLoS One 2010, 5:e11379.
- [79]Taron M, Rosell R, Felip E, Mendez P, Souglakos J, Ronco MS, et al.: BRCA1 mRNA expression levels as an indicator of chemoresistance in lung cancer. Hum Mol Genet 2004, 13:2443-9.
- [80]Ai L, Skehan RR, Saydi J, Lin T, Brown KD: Ataxia-Telangiectasia, Mutated (ATM)/Nuclear Factor kappa light chain enhancer of activated B cells (NFkappaB) signaling controls basal and DNA damage-induced transglutaminase 2 expression. J Biol Chem 2012, 287:18330-41.