期刊论文详细信息
Virology Journal
A novel bocavirus in canine liver
Eric Delwart3  Xutao Deng2  Chunlin Wang6  Jianming Qiu4  Charles Chiu1  Erik Samayoa1  Samia N Naccache1  Lark L Coffey3  Marko Estrada5  Christian M Leutenegger5  Patricia A Pesavento7  Linlin Li3 
[1] UCSF-Abbott Viral Diagnostics and Discovery Center, CA, USA;Blood Systems Research Institute, San Francisco, CA, USA;Department of Laboratory Medicine, University of California, San Francisco, CA, USA;Department of Microbiology, University of Kansas, KS, USA;IDEXX Reference Laboratories, CA, USA;Stanford Genome Technology Center, Stanford, CA, USA;Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA
关键词: Coinfection;    Episome;    Canine bocavirus 3;   
Others  :  1151830
DOI  :  10.1186/1743-422X-10-54
 received in 2012-12-19, accepted in 2013-01-31,  发布年份 2013
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【 摘 要 】

Background

Bocaviruses are classified as a genus within the Parvoviridae family of single-stranded DNA viruses and are pathogenic in some mammalian species. Two species have been previously reported in dogs, minute virus of canines (MVC), associated with neonatal diseases and fertility disorders; and Canine bocavirus (CBoV), associated with respiratory disease.

Findings

In this study using deep sequencing of enriched viral particles from the liver of a dog with severe hemorrhagic gastroenteritis, necrotizing vasculitis, granulomatous lymphadenitis and anuric renal failure, we identified and characterized a novel bocavirus we named Canine bocavirus 3 (CnBoV3). The three major ORFs of CnBoV3 (NS1, NP1 and VP1) shared less than 60% aa identity with those of other bocaviruses qualifying it as a novel species based on ICTV criteria. Inverse PCR showed the presence of concatemerized or circular forms of the genome in liver.

Conclusions

We genetically characterized a bocavirus in a dog liver that is highly distinct from prior canine bocaviruses found in respiratory and fecal samples. Its role in this animal’s complex disease remains to be determined.

【 授权许可】

   
2013 Li et al.; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Tattersall P, Bergoin M, Bloom M, Brown K, Linden R, Tijssen P: Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Edited by Fauquet C, Mayo M, Maniloff J, Desselberger U, Ball L. San Diego: Academic; 2005:353-369.
  • [2]Jartti T, Hedman K, Jartti L, Ruuskanen O, Allander T, Soderlund-Venermo M: Human bocavirus-the first 5 years. Rev Med Virol 2012, 22:46-64.
  • [3]Chen KC, Shull BC, Moses EA, Lederman M, Stout ER, Bates RC: Complete nucleotide sequence and genome organization of bovine parvovirus. J Virol 1986, 60:1085-1097.
  • [4]Cheng WX, Li JS, Huang CP, Yao DP, Liu N, Cui SX, Jin Y, Duan ZJ: Identification and nearly full-length genome characterization of novel porcine bocaviruses. PLoS One 2010, 5:e13583.
  • [5]Shan T, Lan D, Li L, Wang C, Cui L, Zhang W, Hua X, Zhu C, Zhao W, Delwart E: Genomic characterization and high prevalence of bocaviruses in swine. PLoS One 2011, 6:e17292.
  • [6]Shan T, Li L, Simmonds P, Wang C, Moeser A, Delwart E: The fecal virome of pigs on a high-density farm. J Virol 2011, 85:11697-11708.
  • [7]Kapoor A, Mehta N, Esper F, Poljsak-Prijatelj M, Quan PL, Qaisar N, Delwart E, Lipkin WI: Identification and characterization of a new bocavirus species in gorillas. PLoS One 2010, 5:e11948.
  • [8]Sharp CP, LeBreton M, Kantola K, Nana A, Diffo Jle D, Djoko CF, Tamoufe U, Kiyang JA, Babila TG, Ngole EM: Widespread infection with homologues of human parvoviruses B19, PARV4, and human bocavirus of chimpanzees and gorillas in the wild. J Virol 2010, 84:10289-10296.
  • [9]Li L, Shan T, Wang C, Cote C, Kolman J, Onions D, Gulland FM, Delwart E: The fecal viral flora of California sea lions. J Virol 2011, 85:9909-9917.
  • [10]Kapoor A, Mehta N, Dubovi EJ, Simmonds P, Govindasamy L, Medina JL, Street C, Shields S, Lipkin WI: Characterization of novel canine bocaviruses and their association with respiratory disease. J Gen Virol 2012, 93:341-346.
  • [11]Lau SK, Woo PC, Yeung HC, Teng JL, Wu Y, Bai R, Fan RY, Chan KH, Yuen KY: Identification and characterization of bocaviruses in cats and dogs reveals a novel feline bocavirus and a novel genetic group of canine bocavirus. J Gen Virol 2012, 93:1573-1582.
  • [12]Ohshima T, Kawakami K, Abe T, Mochizuki M: A minute virus of canines (MVC: canine bocavirus) isolated from an elderly dog with severe gastroenteritis, and phylogenetic analysis of MVC strains. Vet Microbiol 2010, 145:334-338.
  • [13]Schwartz D, Green B, Carmichael LE, Parrish CR: The canine minute virus (minute virus of canines) is a distinct parvovirus that is most similar to bovine parvovirus. Virology 2002, 302:219-223.
  • [14]Wu Z, Ren X, Yang L, Hu Y, Yang J, He G, Zhang J, Dong J, Sun L, Du J: Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. J Virol 2012, 86:10999-11012.
  • [15]van den Brand JM, van Leeuwen M, Schapendonk CM, Simon JH, Haagmans BL, Osterhaus AD, Smits SL: Metagenomic analysis of the viral flora of pine marten and European badger feces. J Virol 2012, 86:2360-2365.
  • [16]Manteufel J, Truyen U: Animal bocaviruses: a brief review. Intervirology 2008, 51:328-334.
  • [17]Schildgen O, Qiu J, Soderlund-Venermo M: Genomic features of the human bocaviruses. Future Virol 2012, 7:31-39.
  • [18]Kapoor A, Hornig M, Asokan A, Williams B, Henriquez JA, Lipkin WI: Bocavirus episome in infected human tissue contains non-identical termini. PLoS One 2011, 6:e21362.
  • [19]Lusebrink J, Schildgen V, Tillmann RL, Wittleben F, Bohmer A, Muller A, Schildgen O: Detection of head-to-tail DNA sequences of human bocavirus in clinical samples. PLoS One 2011, 6:e19457.
  • [20]Yang WZ, Huang CP, Duan ZJ: [Identification and characterization of porcine bocavirus episomes]. Bing Du Xue Bao 2012, 28:418-423.
  • [21]Binn LN, Lazar EC, Eddy GA, Kajima M: Recovery and characterization of a minute virus of canines. Infect Immun 1970, 1:503-508.
  • [22]Segales J: Porcine circovirus type 2 (PCV2) infections: clinical signs, pathology and laboratory diagnosis. Virus Res 2012, 164:10-19.
  • [23]Victoria JG, Kapoor A, Dupuis K, Schnurr DP, Delwart EL: Rapid identification of known and new RNA viruses from animal tissues. PLoS Pathog 2008, 4:e1000163.
  • [24]Victoria JG, Kapoor A, Li L, Blinkova O, Slikas B, Wang C, Naeem A, Zaidi S, Delwart E: Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol 2009, 83:4642-4651.
  • [25]Kumar S, Nei M, Dudley J, Tamura K: MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 2008, 9:299-306.
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