期刊论文详细信息
BMC Veterinary Research
Emergence of porcine epidemic diarrhea virus in southern Germany
Andrea Ladinig1  Mathias Ritzmann3  Christiane Weissenbacher-Lang4  Herbert Weissenböck4  Sandra Blome5  Anne Pohlmann5  Dennis Hanke5  Robert Fux2  Susanne Zoels3  Julia Stadler3 
[1] University Clinic for Swine, University of Veterinary Medicine Vienna, Vienna, Austria;Institute for Infectious Diseases and Zoonosis at the Centre for Clinical Veterinary Medicine, Ludwig-Maximilians University, Munich, Germany;Clinic for Swine at the Centre for Clinical Veterinary Medicine, Ludwig-Maximilians University, Oberschleissheim, Germany;Institute of Pathology and Forensic Veterinary Medicine, University of Veterinary Medicine Vienna, Vienna, Austria;Friedrich-Loeffler-Institut, Institute of Diagnostic Virology, Greifswald-Insel Riems, Germany
关键词: S INDEL PEDV;    Phylogenetic analysis;    Southern Germany;    Porcine epidemic diarrhea virus;   
Others  :  1219098
DOI  :  10.1186/s12917-015-0454-1
 received in 2015-02-12, accepted in 2015-06-09,  发布年份 2015
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【 摘 要 】

Background

Over the last years, porcine epidemic diarrhea virus (PEDV) has caused devastating enteric diseases in the US and several countries in Asia, while outbreaks in Europe have only been reported sporadically since the 1980s. At present, only insufficient information is available on currently circulating PEDV strains in Europe and their impact on the European swine industry. In this case report, we present epidemic outbreaks of porcine epidemic diarrhea in three farms in South-Western Germany.

Case presentation

Epidemic outbreaks of diarrhea affecting pigs of all age groups were reported in three farms, one fattening farm and two piglet producing farms, in South-Western Germany between May and November 2014. In the fattening farm yellowish, watery diarrhea without evidence of mucus or blood was associated with a massive reduction of feed consumption. Severity of clinical signs and mortality in young suckling pigs varied significantly between the two affected sow farms. While mortality in suckling piglets reached almost 70 % in one sow herd, no increase in suckling piglet mortality was observed in the second sow farm. In all three cases, PEDV was confirmed in feces and small intestines by RT-qPCR. Phylogenetic analyses based on full-length PEDV genomes revealed high identity among strains from all three herds. Moreover, the German strains showed very high nucleotide identity (99.4 %) with a variant of PEDV (OH851) that was isolated in the United States in January 2014. This strain with insertions and deletions in the S-gene (so called INDEL strains) was reported to show lower virulence. Slightly lower identities were found with other strains from the US and Asia.

Conclusion

Phylogenetic information on the distribution of PEDV strains in Europe is severely lacking. In this case report we demonstrate that acute outbreaks of PEDV occurred in southern Germany in 2014. Current strains were clearly different from isolates found in the 1980s and were closely related to a PEDV variant found in the US in 2014. Moreover, the present case report indicates that variant strains of PEDV, containing insertions and deletions in the S gene, which were reported to be of lower virulence, might be able to cause high mortality in suckling piglets.

【 授权许可】

   
2015 Stadler et al.

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【 参考文献 】
  • [1]Pensaert MB, de Bouck P. A new coronavirus-like particle associated with diarrhea in swine. Archives of virology. 1978; 58(3):243-247.
  • [2]Carstens EB. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2009). Archives of virology. 2010; 155(1):133-146.
  • [3]Oldham J: Letter to the editor. Pig Farming 1972:Oct suppl:72–73.
  • [4]Martelli P, Lavazza A, Nigrelli AD, Merialdi G, Alborali LG, Pensaert MB. Epidemic of diarrhoea caused by porcine epidemic diarrhoea virus in Italy. The Veterinary record. 2008; 162(10):307-310.
  • [5]Rodak L, Valicek L, Smid B, Nevorankova Z. An ELISA optimized for porcine epidemic diarrhoea virus detection in faeces. Veterinary microbiology. 2005; 105(1):9-17.
  • [6]Stevenson GW, Hoang H, Schwartz KJ, Burrough ER, Sun D, Madson D et al.. Emergence of Porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 2013; 25(5):649-654.
  • [7]Gao Y, Kou Q, Ge X, Zhou L, Guo X, Yang H. Phylogenetic analysis of porcine epidemic diarrhea virus field strains prevailing recently in China. Archives of virology. 2013; 158(3):711-715.
  • [8]Cima G. Viral disease affects U.S. pigs: porcine epidemic diarrhea found in at least 11 states. Journal of the American Veterinary Medical Association. 2013; 243(1):30-31.
  • [9]Chen Q, Li G, Stasko J, Thomas JT, Stensland WR, Pillatzki AE et al.. Isolation and characterization of porcine epidemic diarrhea viruses associated with the 2013 disease outbreak among swine in the United States. Journal of clinical microbiology. 2014; 52(1):234-243.
  • [10]Wang L, Byrum B, Zhang Y. New variant of porcine epidemic diarrhea virus, United States, 2014. Emerging infectious diseases. 2014; 20(5):917-919.
  • [11]Vlasova AN, Marthaler D, Wang Q, Culhane MR, Rossow KD, Rovira A et al.. Distinct characteristics and complex evolution of PEDV strains, North America, May 2013-February 2014. Emerging infectious diseases. 2014; 20(10):1620-1628.
  • [12]Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of molecular biology. 1990; 215(3):403-410.
  • [13]Chvala S, Fragner K, Hackl R, Hess M, Weissenbock H. Cryptosporidium infection in domestic geese (Anser anser f. domestica) detected by in-situ hybridization. Journal of comparative pathology. 2006; 134(2–3):211-218.
  • [14]New rapid semi-quantitative RT-PCR assay developed to detect porcine epidemic diarrhea virus [http://www.cvm.umn.edu/sdec/prod/groups/cvm/@pub/@cvm/@sdec/documents/content/cvm_content_446628.pdf (2014)]
  • [15]Kim SH, Kim IJ, Pyo HM, Tark DS, Song JY, Hyun BH. Multiplex real-time RT-PCR for the simultaneous detection and quantification of transmissible gastroenteritis virus and porcine epidemic diarrhea virus. Journal of virological methods. 2007; 146(1–2):172-177.
  • [16]Marthaler D, Raymond L, Jiang Y, Collins J, Rossow K, Rovira A. Rapid detection, complete genome sequencing, and phylogenetic analysis of porcine deltacoronavirus. Emerging infectious diseases. 2014; 20(8):1347-1350.
  • [17]Pang XL, Cao M, Zhang M, Lee B. Increased sensitivity for various rotavirus genotypes in stool specimens by amending three mismatched nucleotides in the forward primer of a real-time RT-PCR assay. Journal of virological methods. 2011; 172(1–2):85-87.
  • [18]Vennema H, de Bruin E, Koopmans M. Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology. 2002; 25(2):233-235.
  • [19]Vinje J, Deijl H, van der Heide R, Lewis D, Hedlund KO, Svensson L et al.. Molecular detection and epidemiology of Sapporo-like viruses. Journal of clinical microbiology. 2000; 38(2):530-536.
  • [20]Oka T, Saif LJ, Marthaler D, Esseili MA, Meulia T, Lin CM et al.. Cell culture isolation and sequence analysis of genetically diverse US porcine epidemic diarrhea virus strains including a novel strain with a large deletion in the spike gene. Veterinary microbiology. 2014; 173(3–4):258-269.
  • [21]Juozapaitis M, Aguiar Moreira E, Mena I, Giese S, Riegger D, Pohlmann A et al.. An infectious bat-derived chimeric influenza virus harbouring the entry machinery of an influenza A virus. Nature communications. 2014; 5:4448.
  • [22]Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic biology. 2010; 59(3):307-321.
  • [23]Sozzi E, Luppi A, Lelli D, Martin AM, Canelli E, Brocchi E et al.. Comparison of enzyme-linked immunosorbent assay and RT-PCR for the detection of porcine epidemic diarrhoea virus. Research in veterinary science. 2010; 88(1):166-168.
  • [24]Gerber PF, Gong Q, Huang YW, Wang C, Holtkamp D, Opriessnig T. Detection of antibodies against porcine epidemic diarrhea virus in serum and colostrum by indirect ELISA. Veterinary journal (London, England : 1997). 2014; 202(1):33-36.
  • [25]Swine enteric coronavirus disease testing summary report [http://www.aphis.usda.gov/animal_health/animal_dis_spec/swine/downloads/swine_report_7_24_14.pdf (2014)]
  • [26]Pasick J, Berhane Y, Ojkic D, Maxie G, Embury-Hyatt C, Swekla K et al.. Investigation into the role of potentially contaminated feed as a source of the first-detected outbreaks of porcine epidemic diarrhea in Canada. Transboundary and emerging diseases. 2014; 61(5):397-410.
  • [27]Marthaler D, Jiang Y, Otterson T, Goyal S, Rossow K, Collins J: Complete Genome Sequence of Porcine Epidemic Diarrhea Virus Strain USA/Colorado/2013 from the United States. Genome announcements 2013, 1(4):e00555-13.10.1128/genomeA.00555-13
  • [28]Huang YW, Dickerman AW, Pineyro P, Li L, Fang L, Kiehne R et al.. Origin, evolution, and genotyping of emergent porcine epidemic diarrhea virus strains in the United States. mBio. 2013; 4(5):e00737-00713.
  • [29]Henniger T, Schwarz BA. Porcine Epidemic Diarrhoea-Neuausbrüche in deutschen Mastschweinebeständen. Tierärztliche Umschau. 2014; 69:394-397.
  • [30]Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic acids research. 2002; 30(14):3059-3066.
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