| Cell Division | |
| Emerging players in the initiation of eukaryotic DNA replication | |
| Supriya G Prasanth1  Zhen Shen1  | |
| [1] Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, 601 S. Goodwin Avenue, Urbana, IL 61801, USA | |
| 关键词: DNA replication; Non-coding RNA; RPC; Pre-IC; Pre-RC; MCM; Geminin; Cdt1; ORCA/LRWD1; ORC; | |
| Others : 791049 DOI : 10.1186/1747-1028-7-22 |
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| received in 2012-10-04, accepted in 2012-10-12, 发布年份 2012 | |
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【 摘 要 】
Faithful duplication of the genome in eukaryotes requires ordered assembly of a multi-protein complex called the pre-replicative complex (pre-RC) prior to S phase; transition to the pre-initiation complex (pre-IC) at the beginning of DNA replication; coordinated progression of the replisome during S phase; and well-controlled regulation of replication licensing to prevent re-replication. These events are achieved by the formation of distinct protein complexes that form in a cell cycle-dependent manner. Several components of the pre-RC and pre-IC are highly conserved across all examined eukaryotic species. Many of these proteins, in addition to their bona fide roles in DNA replication are also required for other cell cycle events including heterochromatin organization, chromosome segregation and centrosome biology. As the complexity of the genome increases dramatically from yeast to human, additional proteins have been identified in higher eukaryotes that dictate replication initiation, progression and licensing. In this review, we discuss the newly discovered components and their roles in cell cycle progression.
【 授权许可】
2012 Shen and Prasanth; licensee BioMed Central Ltd.
【 预 览 】
| Files | Size | Format | View |
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| 20140705010006902.pdf | 885KB | ||
| Figure 2. | 48KB | Image | |
| Figure 1. | 50KB | Image |
【 图 表 】
Figure 1.
Figure 2.
【 参考文献 】
- [1]Sclafani RA, Holzen TM: Cell cycle regulation of DNA replication. Annu Rev Genet 2007, 41:237-280.
- [2]Dutta A, Bell SP: Initiation of DNA replication in eukaryotic cells. Annu Rev Cell Dev Biol 1997, 13:293-332.
- [3]Kelly TJ, Brown GW: Regulation of chromosome replication. Annu Rev Biochem 2000, 69:829-880.
- [4]Bell SP, Dutta A: DNA replication in eukaryotic cells. Annu Rev Biochem 2002, 71:333-374.
- [5]DePamphilis ML: The ’ORC cycle’: a novel pathway for regulating eukaryotic DNA replication. Gene 2003, 310:1-15.
- [6]Bell SP: The origin recognition complex: from simple origins to complex functions. Genes Dev 2002, 16:659-672.
- [7]Newlon CS: Yeast chromosome replication and segregation. Microbiol Rev 1988, 52:568-601.
- [8]Bell SP, Stillman B: ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature 1992, 357:128-134.
- [9]Mendez J, Stillman B: Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosis. Mol Cell Biol 2000, 20:8602-8612.
- [10]Tye BK: MCM proteins in DNA replication. Annu Rev Biochem 1999, 68:649-686.
- [11]Labib K: How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells? Genes Dev 2010, 24:1208-1219.
- [12]Nishitani H, Lygerou Z: Control of DNA replication licensing in a cell cycle. Genes to cells: devoted to molecular & cellular mechanisms 2002, 7:523-534.
- [13]Feng H, Kipreos ET: Preventing DNA re-replication–divergent safeguards in yeast and metazoa. Cell Cycle 2003, 2:431-434.
- [14]DePamphilis ML: Cell cycle dependent regulation of the origin recognition complex. Cell Cycle 2005, 4:70-79.
- [15]McGarry TJ, Kirschner MW: Geminin, an inhibitor of DNA replication, is degraded during mitosis. Cell 1998, 93:1043-1053.
- [16]Melixetian M, Helin K: Geminin: a major DNA replication safeguard in higher eukaryotes. Cell Cycle 2004, 3:1002-1004.
- [17]Shen Z, Sathyan KM, Geng Y, Zheng R, Chakraborty A, Freeman B, Wang F, Prasanth KV, Prasanth SG: A WD-repeat protein stabilizes ORC binding to chromatin. Mol Cell 2010, 40:99-111.
- [18]Shen Z, Chakraborty A, Jain A, Giri S, Ha T, Prasanth KV, Prasanth SG: Dynamic association of ORCA with prereplicative complex components regulates DNA replication initiation. Mol Cell Biol 2012, 32:3107-3120.
- [19]Bartke T, Vermeulen M, Xhemalce B, Robson SC, Mann M, Kouzarides T: Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 2010, 143:470-484.
- [20]Chan KM, Zhang Z: Leucine-rich Repeat and WD Repeat-containing Protein 1 Is Recruited to Pericentric Heterochromatin by Trimethylated Lysine 9 of Histone H3 and Maintains Heterochromatin Silencing. J Biol Chem 2012, 287:15024-15033.
- [21]Neer EJ, Schmidt CJ, Nambudripad R, Smith TF: The ancient regulatory-protein family of WD-repeat proteins. Nature 1994, 371:297-300.
- [22]Smith TF, Gaitatzes C, Saxena K, Neer EJ: The WD repeat: a common architecture for diverse functions. Trends Biochem Sci 1999, 24:181-185.
- [23]Li D, Roberts R: WD-repeat proteins: structure characteristics, biological function, and their involvement in human diseases. Cell Mol Life Sci 2001, 58:2085-2097.
- [24]Migliori V, Mapelli M, Guccione E: On WD40 proteins: Propelling our knowledge of transcriptional control? Epigenetics 2012, 7:8.
- [25]Shen Z, Prasanth SG: Orc2 protects ORCA from ubiquitin-mediated degradation. Cell Cycle 2012, 11:19.
- [26]Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M: Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell 2010, 142:967-980.
- [27]Chakraborty A, Shen Z, Prasanth SG: “ORCanization” on heterochromatin: linking DNA replication initiation to chromatin organization. Epigenetics 2011, 6:665-670.
- [28]Prasanth SG, Prasanth KV, Siddiqui K, Spector DL, Stillman B: Human Orc2 localizes to centrosomes, centromeres and heterochromatin during chromosome inheritance. EMBO J 2004, 23:2651-2663.
- [29]Ohta S, Bukowski-Wills JC, Sanchez-Pulido L, Alves Fde L, Wood L, Chen ZA, Platani M, Fischer L, Hudson DF, Ponting CP, et al.: The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics. Cell 2010, 142:810-821.
- [30]Jaco I, Canela A, Vera E, Blasco MA: Centromere mitotic recombination in mammalian cells. J Cell Biol 2008, 181:885-892.
- [31]Reddel RR: Alternative lengthening of telomeres, telomerase, and cancer. Cancer Lett 2003, 194:155-162.
- [32]Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER 3rd, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, et al.: ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 2007, 316:1160-1166.
- [33]Teng YN, Liao MH, Lin YB, Kuo PL, Kuo TY: Expression of lrwd1 in mouse testis and its centrosomal localization. Int J Androl 2010, 33:832-840.
- [34]Iizuka M, Stillman B: Histone acetyltransferase HBO1 interacts with the ORC1 subunit of the human initiator protein. J Biol Chem 1999, 274:23027-23034.
- [35]Iizuka M, Matsui T, Takisawa H, Smith MM: Regulation of replication licensing by acetyltransferase Hbo1. Mol Cell Biol 2006, 26:1098-1108.
- [36]Miotto B, Struhl K: HBO1 histone acetylase is a coactivator of the replication licensing factor Cdt1. Genes Dev 2008, 22:2633-2638.
- [37]Miotto B, Struhl K: HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin. Mol Cell 2010, 37:57-66.
- [38]Wong PG, Glozak MA, Cao TV, Vaziri C, Seto E, Alexandrow M: Chromatin unfolding by Cdt1 regulates MCM loading via opposing functions of HBO1 and HDAC11-geminin. Cell Cycle 2010, 9:4351-4363.
- [39]Miotto B, Struhl K: JNK1 phosphorylation of Cdt1 inhibits recruitment of HBO1 histone acetylase and blocks replication licensing in response to stress. Mol Cell 2011, 44:62-71.
- [40]Aitken A: 14-3-3 proteins: a historic overview. Semin Cancer Biol 2006, 16:162-172.
- [41]Morrison DK: The 14-3-3 proteins: integrators of diverse signaling cues that impact cell fate and cancer development. Trends Cell Biol 2009, 19:16-23.
- [42]Novac O, Alvarez D, Pearson CE, Price GB, Zannis-Hadjopoulos M: The human cruciform-binding protein, CBP, is involved in DNA replication and associates in vivo with mammalian replication origins. J Biol Chem 2002, 277:11174-11183.
- [43]Alvarez D, Novac O, Callejo M, Ruiz MT, Price GB, Zannis-Hadjopoulos M: 14-3-3sigma is a cruciform DNA binding protein and associates in vivo with origins of DNA replication. J Cell Biochem 2002, 87:194-207.
- [44]Zannis-Hadjopoulos M, Novac O, Alvarez D, Price GB: 14-3-3s are DNA-replication proteins. Biochem Soc Trans 2002, 30:397-401.
- [45]Callejo M, Alvarez D, Price GB, Zannis-Hadjopoulos M: The 14-3-3 protein homologues from Saccharomyces cerevisiae, Bmh1p and Bmh2p, have cruciform DNA-binding activity and associate in vivo with ARS307. J Biol Chem 2002, 277:38416-38423.
- [46]Yahyaoui W, Callejo M, Price GB, Zannis-Hadjopoulos M: Deletion of the cruciform binding domain in CBP/14-3-3 displays reduced origin binding and initiation of DNA replication in budding yeast. BMC Mol Biol 2007, 8:27. BioMed Central Full Text
- [47]Yahyaoui W, Zannis-Hadjopoulos M: 14-3-3 proteins function in the initiation and elongation steps of DNA replication in Saccharomyces cerevisiae. J Cell Sci 2009, 122:4419-4426.
- [48]Beall EL, Manak JR, Zhou S, Bell M, Lipsick JS, Botchan MR: Role for a Drosophila Myb-containing protein complex in site-specific DNA replication. Nature 2002, 420:833-837.
- [49]Beall EL, Bell M, Georlette D, Botchan MR: Dm-myb mutant lethality in Drosophila is dependent upon mip130: positive and negative regulation of DNA replication. Genes Dev 2004, 18:1667-1680.
- [50]Calvi BR, Byrnes BA, Kolpakas AJ: Conservation of epigenetic regulation, ORC binding and developmental timing of DNA replication origins in the genus Drosophila. Genetics 2007, 177:1291-1301.
- [51]Reeves R, Nissen MS: The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structure. J Biol Chem 1990, 265:8573-8582.
- [52]Thomae AW, Pich D, Brocher J, Spindler MP, Berens C, Hock R, Hammerschmidt W, Schepers A: Interaction between HMGA1a and the origin recognition complex creates site-specific replication origins. Proc Natl Acad Sci U S A 2008, 105:1692-1697.
- [53]Gehring WJ: Homeo boxes in the study of development. Science 1987, 236:1245-1252.
- [54]Krumlauf R: Hox genes in vertebrate development. Cell 1994, 78:191-201.
- [55]Gehring WJ, Qian YQ, Billeter M, Furukubo-Tokunaga K, Schier AF, Resendez-Perez D, Affolter M, Otting G, Wuthrich K: Homeodomain-DNA recognition. Cell 1994, 78:211-223.
- [56]Gehring WJ, Affolter M, Burglin T: Homeodomain proteins. Annu Rev Biochem 1994, 63:487-526.
- [57]Favier B, Dolle P: Developmental functions of mammalian Hox genes. Mol Hum Reprod 1997, 3:115-131.
- [58]Luo L, Yang X, Takihara Y, Knoetgen H, Kessel M: The cell-cycle regulator geminin inhibits Hox function through direct and polycomb-mediated interactions. Nature 2004, 427:749-753.
- [59]Salsi V, Ferrari S, Ferraresi R, Cossarizza A, Grande A, Zappavigna V: HOXD13 binds DNA replication origins to promote origin licensing and is inhibited by geminin. Mol Cell Biol 2009, 29:5775-5788.
- [60]Zhou B, Liu C, Xu Z, Zhu G: Structural basis for homeodomain recognition by the cell-cycle regulator Geminin. Proc Natl Acad Sci U S A 2012, 21:21.
- [61]Pefani DE, Dimaki M, Spella M, Karantzelis N, Mitsiki E, Kyrousi C, Symeonidou IE, Perrakis A, Taraviras S, Lygerou Z: Idas, a novel phylogenetically conserved geminin-related protein, binds to geminin and is required for cell cycle progression. J Biol Chem 2011, 286:23234-23246.
- [62]Shreeram S, Sparks A, Lane DP, Blow JJ: Cell type-specific responses of human cells to inhibition of replication licensing. Oncogene 2002, 21:6624-6632.
- [63]Tachibana KE, Gonzalez MA, Guarguaglini G, Nigg EA, Laskey RA: Depletion of licensing inhibitor geminin causes centrosome overduplication and mitotic defects. EMBO Rep 2005, 6:1052-1057.
- [64]Seo S, Kroll KL: Geminin’s double life: chromatin connections that regulate transcription at the transition from proliferation to differentiation. Cell Cycle 2006, 5:374-379.
- [65]Kroll KL: Geminin in embryonic development: coordinating transcription and the cell cycle during differentiation. Front Biosci 2007, 12:1395-1409.
- [66]Luo L, Kessel M: Geminin coordinates cell cycle and developmental control. Cell Cycle 2004, 3:711-714.
- [67]Maine GT, Sinha P, Tye BK: Mutants of S. cerevisiae defective in the maintenance of minichromosomes. Genetics 1984, 106:365-385.
- [68]Neuwald AF, Aravind L, Spouge JL, Koonin EV: AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999, 9:27-43.
- [69]Gozuacik D, Chami M, Lagorce D, Faivre J, Murakami Y, Poch O, Biermann E, Knippers R, Brechot C, Paterlini-Brechot P: Identification and functional characterization of a new member of the human Mcm protein family: hMcm8. Nucleic Acids Res 2003, 31:570-579.
- [70]Johnson EM, Kinoshita Y, Daniel DC: A new member of the MCM protein family encoded by the human MCM8 gene, located contrapodal to GCD10 at chromosome band 20p12.3-13. Nucleic Acids Res 2003, 31:2915-2925.
- [71]Volkening M, Hoffmann I: Involvement of human MCM8 in prereplication complex assembly by recruiting hcdc6 to chromatin. Mol Cell Biol 2005, 25:1560-1568.
- [72]Kinoshita Y, Johnson EM, Gordon RE, Negri-Bell H, Evans MT, Coolbaugh J, Rosario-Peralta Y, Samet J, Slusser E, Birkenbach MP, Daniel DC: Colocalization of MCM8 and MCM7 with proteins involved in distinct aspects of DNA replication. Microsc Res Tech 2008, 71:288-297.
- [73]Maiorano D, Cuvier O, Danis E, Mechali M: MCM8 is an MCM2-7-related protein that functions as a DNA helicase during replication elongation and not initiation. Cell 2005, 120:315-328.
- [74]Crevel G, Hashimoto R, Vass S, Sherkow J, Yamaguchi M, Heck MM, Cotterill S: Differential requirements for MCM proteins in DNA replication in Drosophila S2 cells. PLoS One 2007, 2:e833.
- [75]Oehlmann M, Score AJ, Blow JJ: The role of Cdc6 in ensuring complete genome licensing and S phase checkpoint activation. J Cell Biol 2004, 165:181-190.
- [76]Yoshida K: Identification of a novel cell-cycle-induced MCM family protein MCM9. Biochem Biophys Res Commun 2005, 331:669-674.
- [77]Lutzmann M, Maiorano D, Mechali M: Identification of full genes and proteins of MCM9, a novel, vertebrate-specific member of the MCM2-8 protein family. Gene 2005, 362:51-56.
- [78]Lutzmann M, Mechali M: MCM9 binds Cdt1 and is required for the assembly of prereplication complexes. Mol Cell 2008, 31:190-200.
- [79]Lutzmann M, Mechali M: How to load a replicative helicase onto chromatin: a more and more complex matter during evolution. Cell Cycle 2009, 8:1309-1313.
- [80]Hartford SA, Luo Y, Southard TL, Min IM, Lis JT, Schimenti JC: Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression. Proc Natl Acad Sci U S A 2011, 108:17702-17707.
- [81]Nishimura K, Ishiai M, Horikawa K, Fukagawa T, Takata M, Takisawa H, Kanemaki MT: Mcm8 and Mcm9 Form a Complex that Functions in Homologous Recombination Repair Induced by DNA Interstrand Crosslinks. Mol Cell 2012, 47:511-522.
- [82]Lutzmann M, Grey C, Traver S, Ganier O, Maya-Mendoza A, Ranisavljevic N, Bernex F, Nishiyama A, Montel N, Gavois E, et al.: MCM8- and MCM9-Deficient Mice Reveal Gametogenesis Defects and Genome Instability Due to Impaired Homologous Recombination. Mol Cell 2012, 47:523-534.
- [83]Dumas LB, Lussky JP, McFarland EJ, Shampay J: New temperature-sensitive mutants of Saccharomyces cerevisiae affecting DNA replication. Mol Gen Genet 1982, 187:42-46.
- [84]Solomon NA, Wright MB, Chang S, Buckley AM, Dumas LB, Gaber RF: Genetic and molecular analysis of DNA43 and DNA52: two new cell-cycle genes in Saccharomyces cerevisiae. Yeast 1992, 8:273-289.
- [85]Merchant AM, Kawasaki Y, Chen Y, Lei M, Tye BK: A lesion in the DNA replication initiation factor Mcm10 induces pausing of elongation forks through chromosomal replication origins in Saccharomyces cerevisiae. Mol Cell Biol 1997, 17:3261-3271.
- [86]Liu Y, Richards TA, Aves SJ: Ancient diversification of eukaryotic MCM DNA replication proteins. BMC Evol Biol 2009, 9:60. BioMed Central Full Text
- [87]Fien K, Cho YS, Lee JK, Raychaudhuri S, Tappin I, Hurwitz J: Primer utilization by DNA polymerase alpha-primase is influenced by its interaction with Mcm10p. J Biol Chem 2004, 279:16144-16153.
- [88]Okorokov AL, Waugh A, Hodgkinson J, Murthy A, Hong HK, Leo E, Sherman MB, Stoeber K, Orlova EV, Williams GH: Hexameric ring structure of human MCM10 DNA replication factor. EMBO Rep 2007, 8:925-930.
- [89]Robertson PD, Warren EM, Zhang H, Friedman DB, Lary JW, Cole JL, Tutter AV, Walter JC, Fanning E, Eichman BF: Domain architecture and biochemical characterization of vertebrate Mcm10. J Biol Chem 2008, 283:3338-3348.
- [90]Warren EM, Vaithiyalingam S, Haworth J, Greer B, Bielinsky AK, Chazin WJ, Eichman BF: Structural basis for DNA binding by replication initiator Mcm10. Structure 2008, 16:1892-1901.
- [91]Warren EM, Huang H, Fanning E, Chazin WJ, Eichman BF: Physical interactions between Mcm10, DNA, and DNA polymerase alpha. J Biol Chem 2009, 284:24662-24672.
- [92]Eisenberg S, Korza G, Carson J, Liachko I, Tye BK: Novel DNA binding properties of the Mcm10 protein from Saccharomyces cerevisiae. J Biol Chem 2009, 284:25412-25420.
- [93]Cook CR, Kung G, Peterson FC, Volkman BF, Lei M: A novel zinc finger is required for Mcm10 homocomplex assembly. J Biol Chem 2003, 278:36051-36058.
- [94]Homesley L, Lei M, Kawasaki Y, Sawyer S, Christensen T, Tye BK: Mcm10 and the MCM2-7 complex interact to initiate DNA synthesis and to release replication factors from origins. Genes Dev 2000, 14:913-926.
- [95]Gambus A, Jones RC, Sanchez-Diaz A, Kanemaki M, van Deursen F, Edmondson RD, Labib K: GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forks. Nat Cell Biol 2006, 8:358-366.
- [96]Liang DT, Forsburg SL: Characterization of Schizosaccharomyces pombe mcm7(+) and cdc23(+) (MCM10) and interactions with replication checkpoints. Genetics 2001, 159:471-486.
- [97]Hart EA, Bryant JA, Moore K, Aves SJ: Fission yeast Cdc23 interactions with DNA replication initiation proteins. Curr Genet 2002, 41:342-348.
- [98]Lee JK, Seo YS, Hurwitz J: The Cdc23 (Mcm10) protein is required for the phosphorylation of minichromosome maintenance complex by the Dfp1-Hsk1 kinase. Proc Natl Acad Sci U S A 2003, 100:2334-2339.
- [99]Zhu W, Ukomadu C, Jha S, Senga T, Dhar SK, Wohlschlegel JA, Nutt LK, Kornbluth S, Dutta A: Mcm10 and And-1/CTF4 recruit DNA polymerase alpha to chromatin for initiation of DNA replication. Genes Dev 2007, 21:2288-2299.
- [100]Apger J, Reubens M, Henderson L, Gouge CA, Ilic N, Zhou HH, Christensen TW: Multiple functions for Drosophila Mcm10 suggested through analysis of two Mcm10 mutant alleles. Genetics 2010, 185:1151-1165.
- [101]Izumi M, Yanagi K, Mizuno T, Yokoi M, Kawasaki Y, Moon KY, Hurwitz J, Yatagai F, Hanaoka F: The human homolog of Saccharomyces cerevisiae Mcm10 interacts with replication factors and dissociates from nuclease-resistant nuclear structures in G(2) phase. Nucleic Acids Res 2000, 28:4769-4777.
- [102]van Deursen F, Sengupta S, De Piccoli G, Sanchez-Diaz A, Labib K: Mcm10 associates with the loaded DNA helicase at replication origins and defines a novel step in its activation. EMBO J 2012, 31:2195-2206.
- [103]Ricke RM, Bielinsky AK: Mcm10 regulates the stability and chromatin association of DNA polymerase-alpha. Mol Cell 2004, 16:173-185.
- [104]Ricke RM, Bielinsky AK: A conserved Hsp10-like domain in Mcm10 is required to stabilize the catalytic subunit of DNA polymerase-alpha in budding yeast. J Biol Chem 2006, 281:18414-18425.
- [105]Chattopadhyay S, Bielinsky AK: Human Mcm10 regulates the catalytic subunit of DNA polymerase-alpha and prevents DNA damage during replication. Mol Biol Cell 2007, 18:4085-4095.
- [106]Lee C, Liachko I, Bouten R, Kelman Z, Tye BK: Alternative mechanisms for coordinating polymerase alpha and MCM helicase. Mol Cell Biol 2010, 30:423-435.
- [107]Wang J, Wu R, Lu Y, Liang C: Ctf4p facilitates Mcm10p to promote DNA replication in budding yeast. Biochem Biophys Res Commun 2010, 395:336-341.
- [108]Taylor M, Moore K, Murray J, Aves SJ, Price C: Mcm10 interacts with Rad4/Cut5(TopBP1) and its association with origins of DNA replication is dependent on Rad4/Cut5(TopBP1). DNA Repair (Amst) 2011, 10:1154-1163.
- [109]Wohlschlegel JA, Dhar SK, Prokhorova TA, Dutta A, Walter JC: Xenopus Mcm10 binds to origins of DNA replication after Mcm2-7 and stimulates origin binding of Cdc45. Mol Cell 2002, 9:233-240.
- [110]Gregan J, Lindner K, Brimage L, Franklin R, Namdar M, Hart EA, Aves SJ, Kearsey SE: Fission yeast Cdc23/Mcm10 functions after pre-replicative complex formation to promote Cdc45 chromatin binding. Mol Biol Cell 2003, 14:3876-3887.
- [111]Sawyer SL, Cheng IH, Chai W, Tye BK: Mcm10 and Cdc45 cooperate in origin activation in Saccharomyces cerevisiae. J Mol Biol 2004, 340:195-202.
- [112]Heller RC, Kang S, Lam WM, Chen S, Chan CS, Bell SP: Eukaryotic origin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases. Cell 2011, 146:80-91.
- [113]Watase G, Takisawa H, Kanemaki MT: Mcm10 plays a role in functioning of the eukaryotic replicative DNA helicase, Cdc45-Mcm-GINS. Curr Biol 2012, 22:343-349.
- [114]Kanke M, Kodama Y, Takahashi TS, Nakagawa T, Masukata H: Mcm10 plays an essential role in origin DNA unwinding after loading of the CMG components. EMBO J 2012, 31:2182-2194.
- [115]Sakwe AM, Nguyen T, Athanasopoulos V, Shire K, Frappier L: Identification and characterization of a novel component of the human minichromosome maintenance complex. Mol Cell Biol 2007, 27:3044-3055.
- [116]Nishiyama A, Frappier L, Mechali M: MCM-BP regulates unloading of the MCM2-7 helicase in late S phase. Genes Dev 2011, 25:165-175.
- [117]Ding L, Forsburg SL: Schizosaccharomyces pombe minichromosome maintenance-binding protein (MCM-BP) antagonizes MCM helicase. J Biol Chem 2011, 286:32918-32930.
- [118]Li JJ, Schnick J, Hayles J, MacNeill SA: Purification and functional inactivation of the fission yeast MCM(MCM-BP) complex. FEBS Lett 2011, 585:3850-3855.
- [119]Takahashi N, Lammens T, Boudolf V, Maes S, Yoshizumi T, De Jaeger G, Witters E, Inze D, De Veylder L: The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1. EMBO J 2008, 27:1840-1851.
- [120]Jagannathan M, Sakwe AM, Nguyen T, Frappier L: The MCM-associated protein MCM-BP is important for human nuclear morphology. J Cell Sci 2012, 125:133-143.
- [121]Nguyen T, Jagannathan M, Shire K, Frappier L: Interactions of the human MCM-BP protein with MCM complex components and Dbf4. PLoS One 2012, 7:e35931.
- [122]Takahashi N, Quimbaya M, Schubert V, Lammens T, Vandepoele K, Schubert I, Matsui M, Inze D, Berx G, De Veylder L: The MCM-binding protein ETG1 aids sister chromatid cohesion required for postreplicative homologous recombination repair. PLoS Genet 2010, 6:e1000817.
- [123]Casper JM, Kemp MG, Ghosh M, Randall GM, Vaillant A, Leffak M: The c-myc DNA-unwinding element-binding protein modulates the assembly of DNA replication complexes in vitro. J Biol Chem 2005, 280:13071-13083.
- [124]Kemp M, Bae B, Yu JP, Ghosh M, Leffak M, Nair SK: Structure and function of the c-myc DNA-unwinding element-binding protein DUE-B. J Biol Chem 2007, 282:10441-10448.
- [125]Chowdhury A, Liu G, Kemp M, Chen X, Katrangi N, Myers S, Ghosh M, Yao J, Gao Y, Bubulya P, Leffak M: The DNA unwinding element binding protein DUE-B interacts with Cdc45 in preinitiation complex formation. Mol Cell Biol 2010, 30:1495-1507.
- [126]Balestrini A, Cosentino C, Errico A, Garner E, Costanzo V: GEMC1 is a TopBP1-interacting protein required for chromosomal DNA replication. Nat Cell Biol 2010, 12:484-491.
- [127]Piergiovanni G, Costanzo V: GEMC1 is a novel TopBP1-interacting protein involved in chromosomal DNA replication. Cell Cycle 2010, 9:3662-3666.
- [128]Kumagai A, Shevchenko A, Dunphy WG: Treslin collaborates with TopBP1 in triggering the initiation of DNA replication. Cell 2010, 140:349-359.
- [129]Kumagai A, Shevchenko A, Dunphy WG: Direct regulation of Treslin by cyclin-dependent kinase is essential for the onset of DNA replication. J Cell Biol 2011, 193:995-1007.
- [130]Sansam CL, Cruz NM, Danielian PS, Amsterdam A, Lau ML, Hopkins N, Lees JA: A vertebrate gene, ticrr, is an essential checkpoint and replication regulator. Genes Dev 2010, 24:183-194.
- [131]Sangrithi MN, Bernal JA, Madine M, Philpott A, Lee J, Dunphy WG, Venkitaraman AR: Initiation of DNA replication requires the RECQL4 protein mutated in Rothmund-Thomson syndrome. Cell 2005, 121:887-898.
- [132]Matsuno K, Kumano M, Kubota Y, Hashimoto Y, Takisawa H: The N-terminal noncatalytic region of Xenopus RecQ4 is required for chromatin binding of DNA polymerase alpha in the initiation of DNA replication. Mol Cell Biol 2006, 26:4843-4852.
- [133]Van Hatten RA, Tutter AV, Holway AH, Khederian AM, Walter JC, Michael WM: The Xenopus Xmus101 protein is required for the recruitment of Cdc45 to origins of DNA replication. J Cell Biol 2002, 159:541-547.
- [134]Hashimoto Y, Tsujimura T, Sugino A, Takisawa H: The phosphorylated C-terminal domain of Xenopus Cut5 directly mediates ATR-dependent activation of Chk1. Genes Cells 2006, 11:993-1007.
- [135]Yan S, Lindsay HD, Michael WM: Direct requirement for Xmus101 in ATR-mediated phosphorylation of Claspin bound Chk1 during checkpoint signaling. J Cell Biol 2006, 173:181-186.
- [136]Fu YV, Walter JC: DNA replication: metazoan Sld3 steps forward. Curr Biol 2010, 20:R515-R517.
- [137]Sanchez-Pulido L, Diffley JF, Ponting CP: Homology explains the functional similarities of Treslin/Ticrr and Sld3. Curr Biol 2010, 20:R509-R510.
- [138]Mueller AC, Keaton MA, Dutta A: DNA replication: mammalian Treslin-TopBP1 interaction mirrors yeast Sld3-Dpb11. Curr Biol 2011, 21:R638-R640.
- [139]Boos D, Sanchez-Pulido L, Rappas M, Pearl LH, Oliver AW, Ponting CP, Diffley JF: Regulation of DNA replication through Sld3-Dpb11 interaction is conserved from yeast to humans. Curr Biol 2011, 21:1152-1157.
- [140]Wang Z, Kim E, Leffak M, Xu YJ: Treslin, DUE-B, and GEMC1 cannot complement Sld3 mutants in fission yeast. FEMS Yeast Res 2012, 12:486-490.
- [141]Thangavel S, Mendoza-Maldonado R, Tissino E, Sidorova JM, Yin J, Wang W, Monnat RJ Jr, Falaschi A, Vindigni A: Human RECQ1 and RECQ4 helicases play distinct roles in DNA replication initiation. Mol Cell Biol 2010, 30:1382-1396.
- [142]Xu X, Liu Y: Dual DNA unwinding activities of the Rothmund-Thomson syndrome protein, RECQ4. EMBO J 2009, 28:568-577.
- [143]Xu X, Rochette PJ, Feyissa EA, Su TV, Liu Y: MCM10 mediates RECQ4 association with MCM2-7 helicase complex during DNA replication. EMBO J 2009, 28:3005-3014.
- [144]Im JS, Ki SH, Farina A, Jung DS, Hurwitz J, Lee JK: Assembly of the Cdc45-Mcm2-7-GINS complex in human cells requires the Ctf4/And-1, RecQL4, and Mcm10 proteins. Proc Natl Acad Sci U S A 2009, 106:15628-15632.
- [145]Orphanides G, LeRoy G, Chang CH, Luse DS, Reinberg D: FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 1998, 92:105-116.
- [146]LeRoy G, Orphanides G, Lane WS, Reinberg D: Requirement of RSF and FACT for transcription of chromatin templates in vitro. Science 1998, 282:1900-1904.
- [147]Orphanides G, Wu WH, Lane WS, Hampsey M, Reinberg D: The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 1999, 400:284-288.
- [148]Formosa T, Eriksson P, Wittmeyer J, Ginn J, Yu Y, Stillman DJ: Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN. EMBO J 2001, 20:3506-3517.
- [149]Brewster NK, Johnston GC, Singer RA: A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription. Mol Cell Biol 2001, 21:3491-3502.
- [150]Okuhara K, Ohta K, Seo H, Shioda M, Yamada T, Tanaka Y, Dohmae N, Seyama Y, Shibata T, Murofushi H: A DNA unwinding factor involved in DNA replication in cell-free extracts of Xenopus eggs. Curr Biol 1999, 9:341-350.
- [151]Wittmeyer J, Formosa T: The Saccharomyces cerevisiae DNA polymerase alpha catalytic subunit interacts with Cdc68/Spt16 and with Pob3, a protein similar to an HMG1-like protein. Mol Cell Biol 1997, 17:4178-4190.
- [152]Wittmeyer J, Joss L, Formosa T: Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha. Biochemistry 1999, 38:8961-8971.
- [153]VanDemark AP, Blanksma M, Ferris E, Heroux A, Hill CP, Formosa T: The structure of the yFACT Pob3-M domain, its interaction with the DNA replication factor RPA, and a potential role in nucleosome deposition. Mol Cell 2006, 22:363-374.
- [154]Tan BC, Chien CT, Hirose S, Lee SC: Functional cooperation between FACT and MCM helicase facilitates initiation of chromatin DNA replication. EMBO J 2006, 25:3975-3985.
- [155]Tan BC, Liu H, Lin CL, Lee SC: Functional cooperation between FACT and MCM is coordinated with cell cycle and differential complex formation. J Biomed Sci 2010, 17:11. BioMed Central Full Text
- [156]Abe T, Sugimura K, Hosono Y, Takami Y, Akita M, Yoshimura A, Tada S, Nakayama T, Murofushi H, Okumura K, et al.: The histone chaperone facilitates chromatin transcription (FACT) protein maintains normal replication fork rates. J Biol Chem 2011, 286:30504-30512.
- [157]Kundu LR, Seki M, Watanabe N, Murofushi H, Furukohri A, Waga S, Score AJ, Blow JJ, Horikoshi M, Enomoto T, Tada S: Biphasic chromatin binding of histone chaperone FACT during eukaryotic chromatin DNA replication. Biochim Biophys Acta 2011, 1813:1129-1136.
- [158]Kouprina N, Kroll E, Bannikov V, Bliskovsky V, Gizatullin R, Kirillov A, Shestopalov B, Zakharyev V, Hieter P, Spencer F, et al.: CTF4 (CHL15) mutants exhibit defective DNA metabolism in the yeast Saccharomyces cerevisiae. Mol Cell Biol 1992, 12:5736-5747.
- [159]Hanna JS, Kroll ES, Lundblad V, Spencer FA: Saccharomyces cerevisiae CTF18 and CTF4 are required for sister chromatid cohesion. Mol Cell Biol 2001, 21:3144-3158.
- [160]Suter B, Tong A, Chang M, Yu L, Brown GW, Boone C, Rine J: The origin recognition complex links replication, sister chromatid cohesion and transcriptional silencing in Saccharomyces cerevisiae. Genetics 2004, 167:579-591.
- [161]Gambus A, van Deursen F, Polychronopoulos D, Foltman M, Jones RC, Edmondson RD, Calzada A, Labib K: A key role for Ctf4 in coupling the MCM2-7 helicase to DNA polymerase alpha within the eukaryotic replisome. EMBO J 2009, 28:2992-3004.
- [162]Tanaka H, Katou Y, Yagura M, Saitoh K, Itoh T, Araki H, Bando M, Shirahige K: Ctf4 coordinates the progression of helicase and DNA polymerase alpha. Genes Cells 2009, 14:807-820.
- [163]Gosnell JA, Christensen TW: Drosophila Ctf4 is essential for efficient DNA replication and normal cell cycle progression. BMC Mol Biol 2011, 12:13. BioMed Central Full Text
- [164]Bermudez VP, Farina A, Tappin I, Hurwitz J: Influence of the human cohesion establishment factor Ctf4/AND-1 on DNA replication. J Biol Chem 2010, 285:9493-9505.
- [165]Hodgson B, Calzada A, Labib K: Mrc1 and Tof1 regulate DNA replication forks in different ways during normal S phase. Mol Biol Cell 2007, 18:3894-3902.
- [166]Hayano M, Kanoh Y, Matsumoto S, Masai H: Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast. Mol Cell Biol 2011, 31:2380-2391.
- [167]Wawrousek KE, Fortini BK, Polaczek P, Chen L, Liu Q, Dunphy WG, Campbell JL: Xenopus DNA2 is a helicase/nuclease that is found in complexes with replication proteins And-1/Ctf4 and Mcm10 and DSB response proteins Nbs1 and ATM. Cell Cycle 2010, 9:1156-1166.
- [168]Guler GD, Fanning E: The replisome: a nanomachine or a dynamic dance of protein partners? Cell Cycle 2010, 9:1680-1681.
- [169]Hendrick JP, Wolin SL, Rinke J, Lerner MR, Steitz JA: Ro small cytoplasmic ribonucleoproteins are a subclass of La ribonucleoproteins: further characterization of the Ro and La small ribonucleoproteins from uninfected mammalian cells. Mol Cell Biol 1981, 1:1138-1149.
- [170]Pruijn GJ, Slobbe RL, Van Venrooij WJ: Structure and function of La and Ro RNPs. Mol Biol Rep 1990, 14:43-48.
- [171]Pruijn GJ, Wingens PA, Peters SL, Thijssen JP, van Venrooij WJ: Ro RNP associated Y RNAs are highly conserved among mammals. Biochim Biophys Acta 1993, 1216:395-401.
- [172]Farris AD, O’Brien CA, Harley JB: Y3 is the most conserved small RNA component of Ro ribonucleoprotein complexes in vertebrate species. Gene 1995, 154:193-198.
- [173]Mosig A, Guofeng M, Stadler BM, Stadler PF: Evolution of the vertebrate Y RNA cluster. Theory Biosci 2007, 126:9-14.
- [174]Perreault J, Perreault JP, Boire G: Ro-associated Y RNAs in metazoans: evolution and diversification. Mol Biol Evol 2007, 24:1678-1689.
- [175]Christov CP, Gardiner TJ, Szuts D, Krude T: Functional requirement of noncoding Y RNAs for human chromosomal DNA replication. Mol Cell Biol 2006, 26:6993-7004.
- [176]Langley AR, Chambers H, Christov CP, Krude T: Ribonucleoprotein particles containing non-coding Y RNAs, Ro60, La and nucleolin are not required for Y RNA function in DNA replication. PLoS One 2010, 5:e13673.
- [177]Krude T, Christov CP, Hyrien O, Marheineke K: Y RNA functions at the initiation step of mammalian chromosomal DNA replication. J Cell Sci 2009, 122:2836-2845.
- [178]Gardiner TJ, Christov CP, Langley AR, Krude T: A conserved motif of vertebrate Y RNAs essential for chromosomal DNA replication. RNA 2009, 15:1375-1385.
- [179]Zhang AT, Langley AR, Christov CP, Kheir E, Shafee T, Gardiner TJ, Krude T: Dynamic interaction of Y RNAs with chromatin and initiation proteins during human DNA replication. J Cell Sci 2011, 124:2058-2069.
- [180]Collart C, Christov CP, Smith JC, Krude T: The midblastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis. Mol Cell Biol 2011, 31:3857-3870.
- [181]Adams A: Replication of latent Epstein-Barr virus genomes in Raji cells. J Virol 1987, 61:1743-1746.
- [182]Yates JL, Guan N: Epstein-Barr virus-derived plasmids replicate only once per cell cycle and are not amplified after entry into cells. J Virol 1991, 65:483-488.
- [183]Chaudhuri B, Xu H, Todorov I, Dutta A, Yates JL: Human DNA replication initiation factors, ORC and MCM, associate with oriP of Epstein-Barr virus. Proc Natl Acad Sci U S A 2001, 98:10085-10089.
- [184]Dhar SK, Yoshida K, Machida Y, Khaira P, Chaudhuri B, Wohlschlegel JA, Leffak M, Yates J, Dutta A: Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin. Cell 2001, 106:287-296.
- [185]Schepers A, Ritzi M, Bousset K, Kremmer E, Yates JL, Harwood J, Diffley JF, Hammerschmidt W: Human origin recognition complex binds to the region of the latent origin of DNA replication of Epstein-Barr virus. EMBO J 2001, 20:4588-4602.
- [186]Lindner SE, Sugden B: The plasmid replicon of Epstein-Barr virus: mechanistic insights into efficient, licensed, extrachromosomal replication in human cells. Plasmid 2007, 58:1-12.
- [187]Norseen J, Thomae A, Sridharan V, Aiyar A, Schepers A, Lieberman PM: RNA-dependent recruitment of the origin recognition complex. EMBO J 2008, 27:3024-3035.
- [188]Snudden DK, Hearing J, Smith PR, Grasser FA, Griffin BE: EBNA-1, the major nuclear antigen of Epstein-Barr virus, resembles ‘RGG’ RNA binding proteins. EMBO J 1994, 13:4840-4847.
- [189]Lu CC, Wu CW, Chang SC, Chen TY, Hu CR, Yeh MY, Chen JY, Chen MR: Epstein-Barr virus nuclear antigen 1 is a DNA-binding protein with strong RNA-binding activity. J Gen Virol 2004, 85:2755-2765.
- [190]Burd CG, Dreyfuss G: Conserved structures and diversity of functions of RNA-binding proteins. Science 1994, 265:615-621.
- [191]Norseen J, Johnson FB, Lieberman PM: Role for G-quadruplex RNA binding by Epstein-Barr virus nuclear antigen 1 in DNA replication and metaphase chromosome attachment. J Virol 2009, 83:10336-10346.
- [192]Huppert JL: Four-stranded nucleic acids: structure, function and targeting of G-quadruplexes. Chem Soc Rev 2008, 37:1375-1384.
- [193]Mohammad MM, Donti TR, Sebastian Yakisich J, Smith AG, Kapler GM: Tetrahymena ORC contains a ribosomal RNA fragment that participates in rDNA origin recognition. EMBO J 2007, 26:5048-5060.
- [194]Sasaki T, Li A, Gillespie PJ, Blow JJ, Gilbert DM: Evidence for a mammalian late-G1 phase inhibitor of replication licensing distinct from geminin or Cdk activity. Nucleus 2011, 2:455-464.
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