期刊论文详细信息
Journal of Clinical Bioinformatics
Potential identification of pediatric asthma patients within pediatric research database using low rank matrix decomposition
Teeradache Viangteeravat1 
[1] Biomedical Informatics Core, Children’s Foundation Research Institute, Department of Pediatrics, The University of Tennessee Health Science Center, 50 N. Dunlap, 38013, Memphis, TN, USA
关键词: Classification;    Feature extraction;    Data mining;    Machine learning;    Biomedical informatics;    Medical informatics;    Translational research;    Clinical research;   
Others  :  802796
DOI  :  10.1186/2043-9113-3-16
 received in 2013-07-20, accepted in 2013-08-22,  发布年份 2013
PDF
【 摘 要 】

Asthma is a prevalent disease in pediatric patients and most of the cases begin at very early years of life in children. Early identification of patients at high risk of developing the disease can alert us to provide them the best treatment to manage asthma symptoms. Often evaluating patients with high risk of developing asthma from huge data sets (e.g., electronic medical record) is challenging and very time consuming, and lack of complex analysis of data or proper clinical logic determination might produce invalid results and irrelevant treatments. In this article, we used data from the Pediatric Research Database (PRD) to develop an asthma prediction model from past All Patient Refined Diagnosis Related Groupings (APR-DRGs) coding assignments. The knowledge gleamed in this asthma prediction model, from both routinely use by physicians and experimental findings, will become fused into a knowledge-based database for dissemination to those involved with asthma patients. Success with this model may lead to expansion with other diseases.

【 授权许可】

   
2013 Viangteeravat; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20140708031420412.pdf 1197KB PDF download
Figure 4. 49KB Image download
Figure 3. 34KB Image download
Figure 2. 67KB Image download
Figure 1. 54KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

【 参考文献 】
  • [1]Chandra Shekar DV, Sesha Srinivas V: Clinical Data Mining An Approach for Identification of Refractive Errors. Hong Kong: Proceedings of the International MultiConference of Engineers and Computer Scientists 2008 Vol I IMECS 2008; 2008. 19-21 March
  • [2]Palaniappan S, Ling C: Clinical Decision Support Using OLAP With Data Mining. IJCSNS International Journal of Computer Science and Network Security September 2008, 8:9.
  • [3]Prather JC, et al.: Medical data mining: knowledge discovery in a clinical data warehouse. Proc AMIA Annu Fall Symp 1997, 101-105.
  • [4]Chae YM, et al.: Data mining approach to policy analysis in a health insurance domain. Int J Med Inform 2001, 62(2-3):103-111.
  • [5]Hedberg SR: The data gold-rush. Byte 1995, 20(10):83-88.
  • [6]Mohri M, Rostamizadeh A, Talwalkar A: Foundations of Machine Learning. New York: The MIT Press; 2012.
  • [7]Huang Z: Extensions to the k-means algorithm for clustering large data sets with categorical values. Data Mining and Knowledge Discovery 1998, 283:304.
  • [8]Jain AK, Murty MN, Flynn PJ: Data Clustering: A Review. ohio: ACM computing surveys; 1999.
  • [9]Neapolitan RE: Learning Bayesian Networks. Illinois: Prentice Hall; 2004.
  • [10]Gelman A: A Bayesian formulation of exploratory data analysis and goodness-of-fit testing. International Statistical Review 2003, 71(2):369-382.
  • [11]Tom M: Machine Learning. McGraw-Hill; 1997:55-58.
  • [12]Grzymala-Busse JW: Selected algorithms of machine learning from examples. Fundamenta Informaticae 1993, 18:193-207.
  • [13]Liu WX, et al.: Nonnegative matrix factorization and its applications in pattern recognition. Chinese Science Bulletin 2006, 51(1):7-18.
  • [14]Cemgil AT: Bayesian inference for nonnegative matrix factorisation models. Comput Intell Neurosci 2009, 785152.
  • [15]Berry MW, Gillis N, Glineur F: Document Classification Using Nonnegative Matrix Factorization and Underapproximation. IEEE; 2009.
  • [16]Sedman AB, Bahl V, Bunting E, Bandy K, Jones S, Nasr SZ, Schulz K, Campbell DA: Clinical redesign using all patient refined diagnosis related groups. Pediatrics 2004, 114(4):965-969.
  • [17]Viangteeravat T: Giving Raw Data a Chance to Talk: A demonstration of de-identified Pediatric Research Database and exploratory analysis techniques for possible cohort discovery and identifiable high risk factors for readmission. Proceeding of 12TH Annual UT-ORNL-KBRIN Bioinformatics Summit 2013.
  • [18]Srebro N, Jaakkola T: Weighted Low Rank Approximation. Washington DC: Proceedings of the Twentieth International Conference on Machine Learning (ICML-2003); 2003.
  • [19]Young E: Singular Value Decomposition. http://www.schonemann.de//svd.htm webcite
  • [20]Cadzow JA: Signal enhancement: a useful signal processing tool Spectrum Estimation and Modeling. Fourth Annual ASSP Workshop 1988, 162:167.
  • [21]Cadzow JA: Minimum l(1), l(2), and l(infinity) norm approximate solutions to an overdetermined system of linear equations. Digital Signal Processing 2002, 12(4):524-560.
  • [22]Viangteeravat T: Discrete Approximation using L1 norm Techniques. Master Thesis: Electrical Engineering, Vanderbilt University; 2000.
  • [23]Cadzow JA: Application of the l1 norm in Signal Processing". Department of Electrical Engineering. Nashville: Vanderbilt University; 1999.
  • [24]Perkins J: Python Text Processing with NLTK 2.0 Cookbook. Birmingham: Packt Publishing; 2010.
  文献评价指标  
  下载次数:41次 浏览次数:49次