期刊论文详细信息
BMC Medical Research Methodology
A semi-parametric approach to estimate risk functions associated with multi-dimensional exposure profiles: application to smoking and lung cancer
Isabelle Stücker1  Sylvia Richardson2  Lamiae Azizi3  Silvia Liverani2  David I Hastie4 
[1]Université Paris-Sud, UMRS 1018, F-94807, Villejuif, France
[2]MRC Biostatistics Unit, Cambridge, UK
[3]Unite d’Epidemiologie Animale, INRA-Theix, Saint-Genès-Champanelle, France
[4]Imperial College, London, UK
关键词: Pack-years;    Duration;    Intensity;    Case control study;    Bayesian clustering;    Lung cancer;    Smoking;   
Others  :  866628
DOI  :  10.1186/1471-2288-13-129
 received in 2013-04-09, accepted in 2013-10-14,  发布年份 2013
PDF
【 摘 要 】

Background

A common characteristic of environmental epidemiology is the multi-dimensional aspect of exposure patterns, frequently reduced to a cumulative exposure for simplicity of analysis. By adopting a flexible Bayesian clustering approach, we explore the risk function linking exposure history to disease. This approach is applied here to study the relationship between different smoking characteristics and lung cancer in the framework of a population based case control study.

Methods

Our study includes 4658 males (1995 cases, 2663 controls) with full smoking history (intensity, duration, time since cessation, pack-years) from the ICARE multi-centre study conducted from 2001-2007. We extend Bayesian clustering techniques to explore predictive risk surfaces for covariate profiles of interest.

Results

We were able to partition the population into 12 clusters with different smoking profiles and lung cancer risk. Our results confirm that when compared to intensity, duration is the predominant driver of risk. On the other hand, using pack-years of cigarette smoking as a single summary leads to a considerable loss of information.

Conclusions

Our method estimates a disease risk associated to a specific exposure profile by robustly accounting for the different dimensions of exposure and will be helpful in general to give further insight into the effect of exposures that are accumulated through different time patterns.

【 授权许可】

   
2013 Hastie et al.; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20140727080038263.pdf 943KB PDF download
84KB Image download
92KB Image download
68KB Image download
38KB Image download
【 图 表 】

【 参考文献 】
  • [1]Thurston SW, Liu G, Miller DP, Christiani DC: Modeling lung cancer risk in case-control studies using a new dose metric of smoking. Cancer Epidemiol Biomarkers Prev 2005, 14(10):296-302.
  • [2]Lubin JH, Alavanja MC, Caporaso N, et al.: Cigarette smoking and cancer risk: modeling total exposure and intensity. Am J Epidemiol 2007, 166(4):479-489.
  • [3]Lubin JH, Caporaso NE: Cigarette smoking and cancer risk: modeling total exposure and intensity. Am J Epidemiol 2007, 166(4):479-489.
  • [4]Abrahamowicz M, Siemiatycki J, Rachet B, Leffondré K: Modeling smoking history: a comparison of different approaches. Am J Epidemiol 2002, 156(9):813-823.
  • [5]Lacourt A, Gramond C, Leffondré K, et al.: Temporal patterns of occupational asbestos exposure and risk of pleural mesothelioma. Eur Respir J 2012, 39(6):1304-1312.
  • [6]Peto J: That the effects of smoking should be measured in pack-years: misconceptions 4. Br J Cancer 2012, 107(3):406-407.
  • [7]Peto R: Influence of dose and duration of smoking on lung cancer rates. IARC Sci Publ 1986, 74:23-33.
  • [8]Breiman L, Friedman JH, Olshen RA, Stone C: Classification and Regression Trees. Monterey, CA: Wadsworth & Brooks/Cole Advanced Books & Software; 1984.
  • [9]Ritchie MD, Hahn LW, Roodi N, et al.: Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 2001, 69(1):138-147.
  • [10]Molitor J, Papathomas M, Jerrett M, Richardson S: Bayesian profile regression with an application to the National Survey of Children’s Health. Biostatistics 2010, 11(3):484-498.
  • [11]Papathomas M, Molitor J, Richardson S, Riboli E, Vineis P: Examining the joint effect of multiple risk factors using exposure risk profiles: lung cancer in nonsmokers. Environ Health Perspect 2011, 119(1):84-91.
  • [12]Papathomas M, Molitor J, Hoggart C, Hastie D, Richardson S: Exploring data from genetic association studies using Bayesian variable selection and the Dirichlet process: application to searching for gene x gene patterns. Genet Epidemiol 2012, 36:663-674.
  • [13]Luce D, Stücker I, Group IS: Investigation of occupational and environmental causes of respiratory cancers (ICARE): a multicenter, population-based case-control study in France. BMC Public Health 2011, 11:928. BioMed Central Full Text
  • [14]Consonni D, De Matteis S, Lubin JH, et al.: Lung cancer and occupation in a population-based case-control study. Am J Epidemiol 2010, 171(3):323-333.
  • [15]Green PJ, Richardson S: Modelling heterogeneity with and without the Dirichlet process. Scandinavian Journal of Statistics 2001, 28:355-375.
  • [16]Antoniak CE: Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems. Ann Stat 1974, 2(6):1152-1174.
  • [17]Ishwaran H, James L: Gibbs sampling methods for stick-breaking priors. J Am Statist Assoc 2011, 96:161-173.
  • [18]Ishwaran H, James L: Markov chain Monte Carlo in approximate Dirichlet and beta two parameter process hierarchical models. Biometrika 2000, 83:371-390.
  • [19]Ishwaran H: Inference for the random effects in Bayesian generalized linear mixed models. ASA Proc Bayesian Stat Sci Sect 2000, 11:371-390.
  • [20]Gelfand AE, Kottas A: A computational approach for full nonparametric Bayesian inference under Dirichlet process mixture models. J Comput Graphical Stat 2002, 11:289-305.
  • [21]Walker SG: Sampling the Dirichlet mixture model with slices. Commun Stat-Simul C 2007, 36:45-54.
  • [22]Papaspiliopoulos P, Roberts GO: Retrospective Markov chain Monte Carlo methods for Dirichlet process hierarchical models. Biometrika 2008, 65(1):169-186.
  • [23]Kalli M, Griffin JE, Walker SG: Slice sampling mixture models. Stat Comput 2011, 21:93-105.
  • [24]Kaufman L, Rousseeuw PJ: Finding groups in data: an introduction to cluster analysis. Hoboken NJ: Wiley-Interscience; 2005.
  • [25]Dahl D: Model-based clustering for expression data via a Dirichlet process mixture model. In : Kim-Anh D, Muller P and Vannuci M (Eds.) Bayesian Inference for Gene Expression and Proteomics. Cambridge: Cambridge University Press; 2006:201-218.
  • [26]Ohlssen DI, Sharples LD, Spiegelhalter DJ: Flexible random-effects models using Bayesian semi-parametric models: applications to institutional comparisons. Stat Med 2007, 26:2088-2112.
  • [27]Liu JS: Nonparametric hierarchical Bayes via sequential imputation. Ann Stat 1996, 24:911-930.
  • [28]Zhang H, Bonney G: Use of Classification Trees for Association Studies. Genet Epidemiol 2000, 19:323-332.
  • [29]Lemon SC, Roy J, Clark MA, Friedmann PD, Rakowski W: Classification and regression tree analysis in public health: methodological review and comparison with logistic regression. Ann Behav Med 2003, 26(3):172-181.
  • [30]Wang W, Spitz MR, Yang H, Lu C, Stewart DJ, Wu X: Genetic variants in cell cycle control pathway confer susceptibility to lung cancer. Clin Cancer Res 2007, 13(19):5974-5981.
  • [31]Goel R, Misra A, Kondal D, Vikram NK, Wasirt JS, Pandey RM, et al.: Identification of insulin resistance in Asian Indian adolescents: classification and regression tree (CART) and logistic regression based classification rules. Clin Endocrinol 2009, 70:717-724.
  • [32]Pesch B, Kenzia B, Gustavsson P, et al.: Cigarette smoking and lung cancer- relative risk estimates for the major histological types from a pooled analysis of case-control studies. Int J Cancer 2012, 131:1210-1219.
  • [33]Tarnaud C, Guida F, Papadopoulos A, et al.: Body mass index and lung cancer risk: results from the, ICARE study, a large, population-based case-control study. Cancer Causes Control 2012, 23(7):1113-1126.
  • [34]MacLehose RF, Dunson DB, Herring AH, Hoppin J: Bayesian methods for highly correlated exposure data. Epidemiology 2007, 18:199-207.
  文献评价指标  
  下载次数:60次 浏览次数:27次