期刊论文详细信息
BMC Research Notes
Morphological and genetic changes induced by excess Zn in roots of Medicago truncatula A17 and a Zn accumulating mutant
David H McNear1  Guiliang Tang2  Ricky W Lewis3 
[1] Ag Science Bldg, North1100 Nicholasville Road, Lexington, KY 40546-0091, USA;Department of Biological Sciences, Michigan Technological University, Houghton, MI 49931, USA;Rhizosphere Science Laboratory, Department of Plant and Soil Science, University of Kentucky, Lexington, KY 40546, USA
关键词: Root architecture;    Legume;    QRT-PCR;    Translocation factor;    Zn stress;    MicroRNA (miRNA);    Abiotic stress;    Medicago truncatula;   
Others  :  1165110
DOI  :  10.1186/1756-0500-5-657
 received in 2012-07-06, accepted in 2012-11-15,  发布年份 2012
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【 摘 要 】

Background

Nutrient fluxes associated with legume-rhizobia symbioses are poorly understood and little is known regarding the influence of abiotic stresses on development and maintenance of N-fixing nodules and root system architecture (RSA). We examined effects of Zn on nodule development and structure, root architecture, and expression of nodulation-related miRNAs in Medicago truncatula and the mutant, raz (requires additional Zn).

Findings

Excess Zn increased root and shoot associated Zn in both genotypes, however, raz plants had lower root associated Zn than WT plants. Roots of raz plants exposed to excess Zn had less volume, surface area, and total length compared to WT plants. Raz plants had lower lateral root number than WT plants. Excess Zn was found to increase root diameter in both genotypes. The Mn Translocation Factor (TfMn) increased in response to Zn in both genotypes; this was more pronounced in raz plants. TfZn was higher in raz plants and reduced in both genotypes in response to Zn. Nodulation was not influenced by Zn treatment or plant genotype. MicroRNA166 was upregulated under excess Zn in WT plants.

Conclusions

Neither the raz mutation nor Zn treatment affected nodulation, however, raz plants had altered RSA compared with WT and responded differently to Zn, implying the mutation potentially modulates RSA responses to Zn but doesn’t play a direct role in nodulation. MicroRNA166 was significantly induced in WT plants by excess Zn, warranting further investigation into the potential role it plays in controlling RSA.

【 授权许可】

   
2012 Lewis et al; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Cook DR: Medicago truncatula – a model in the making!: Commentary. Curr Opin Plant Biol 1999, 2(4):301-304.
  • [2]Rose RJ: Medicago truncatula as a model for understanding plant interactions with other organisms, plant development and stress biology: past, present and future. Funct Plant Biol 2008, 35(4):253-264.
  • [3]Ellis DR, Lopez-Millan AF, Grusak MA: Metal physiology and accumulation in a Medicago truncatula mutant exhibiting an elevated requirement for zinc. New Phytol 2003, 158(1):207-218.
  • [4]Kulikova O, Gualtieri G, Geurts R, Kim DJ, Cook D, Huguet T, de Jong JH, Fransz PF, Bisseling T: Integration of the FISH pachytene and genetic maps of Medicago truncatula. Plant J 2001, 27(1):49-58.
  • [5]Munzuroglu O, Geckil H: Effects of Metals on Seed Germination, Root Elongation, and Coleoptile and Hypocotyl Growth in Triticum aestivum and Cucumis sativus. Arch Environ Contam Toxicol 2002, 43(2):203-213.
  • [6]Godbold DL, Hüttermann A: Effect of zinc, cadmium and mercury on root elongation of Picea abies (Karst.) seedlings, and the significance of these metals to forest die-back. Environ Pollut Ecol Biol 1985, 38(4):375-381.
  • [7]Wong MH, Bradshaw AD: A Comparison of the Toxicity of Heavy Metals, Using Root Elongation of Rye Grass, Lolium Perenne. New Phytol 1982, 91(2):255-261.
  • [8]Ibekwe AM, Angle JS, Chaney RL, VanBerkum P: Zinc and cadmium toxicity to alfalfa and its microsymbiont. J Environ Qual 1996, 25(5)):1032-1040.
  • [9]Robb J, Busch L, Rauser WE: Zinc Toxicity and Xylem Vessel Wall Alterations in White Beans. Ann Bot 1980, 46(1):43-50.
  • [10]Disante KB, Fuentes D, Cortina J: Response to drought of Zn-stressed Quercus suber L. seedlings. Environ Exp Bot 2011, 70(2–3):96-103.
  • [11]Rout GR, Das P: Effect of metal toxicity on plant growth and metabolism: I. Zinc. Agronomie 2003, 23(1):3-11.
  • [12]Allen E, Xie ZX, Gustafson AM, Carrington JC: microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121(2):207-221.
  • [13]Bari R, Pant BD, Stitt M, Scheible WR: PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 2006, 141(3):988-999.
  • [14]Jones-Rhoades MW, Bartel DP: Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004, 14(6):787-799.
  • [15]Liu PP, Montgomery TA, Fahlgren N, Kasschau KD, Nonogaki H, Carrington JC: Repression of AUXIN RESPONSE FACTOR10 by microRNA160 is critical for seed germination and post-germination stages. Plant J 2007, 52(1):133-146.
  • [16]Lu SF, Sun YH, Shi R, Clark C, Li LG, Chiang VL: Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17(8):2186-2203.
  • [17]Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones JDG: A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 2006, 312(5772):436-439.
  • [18]Pant BD, Buhtz A, Kehr J, Scheible WR: MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J 2008, 53(5):731-738.
  • [19]Reyes JL, Chua NH: ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J 2007, 49(4):592-606.
  • [20]Sunkar R, Kapoor A, Zhu JK: Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 2006, 18(8):2051-2065.
  • [21]Sunkar R, Zhu JK: Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16(8):2001-2019.
  • [22]Zhang Z, Wei L, Zou X, Tao Y, Liu Z, Zheng Y: Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells. Ann Bot 2008, 102(4):509-519.
  • [23]Zhao BT, Liang RQ, Ge LF, Li W, Xiao HS, Lin HX, Ruan KC, Jin YX: Identification of drought-induced microRNAs in rice. Biochem Bioph Res Co 2007, 354(2):585-590.
  • [24]Lewis RW, Mendu V, McNear DH, Tang G: Roles of MicroRNAs in Plant Abiotic Stress. In Molecular Techniques in Crop Improvement. Edited by Jain SM, Brar DS. Netherlands: Springer; 2009:357-372.
  • [25]He L, Hannon GJ: Micrornas: Small RNAs with a big role in gene regulation. Nat Rev Genet 2004, 5(7):522-531.
  • [26]Chiou TJ: The role of microRNAs in sensing nutrient stress. Plant Cell Environ 2007, 30(3):323-332.
  • [27]Yamasaki H, Abdel-Ghany SE, Cohu CM, Kobayashi Y, Shikanai T, Pilon M: Regulation of copper homeostasis by micro-RNA in Arabidopsis. J Biol Chem 2007, 282(22):16369-16378.
  • [28]Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Narry Kim V, et al.: microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J 2005, 42(1):84-94.
  • [29]Jung J-H, Park C-M: MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta 2007, 225(6):1327-1338.
  • [30]McConnell JR, Emery J, Eshed Y, Bao N, Bowman J, Barton MK: Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 2001, 411(6838):709-713.
  • [31]Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A, Baum SF, Bowman JL: Radial Patterning of Arabidopsis Shoots by Class III HD-ZIP and KANADI Genes. Current biology: CB 2003, 13(20):1768-1774.
  • [32]Otsuga D, DeGuzman B, Prigge MJ, Drews GN, Clark SE: REVOLUTA regulates meristem initiation at lateral positions. Plant J 2001, 25(2):223-236.
  • [33]Carlsbecker A, Lee JY, Roberts CJ, Dettmer J, Lehesranta S, Zhou J, Lindgren O, Moreno-Risueno MA, Vaten A, Thitamadee S, et al.: Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 2010, 465(7296):316-321.
  • [34]Boualem A, Laporte P, Jovanovic M, Laffont C, Plet J, Combier JP, Niebel A, Crespi M, Frugier F: MicroRNA166 controls root and nodule development in Medicago truncatula. Plant J 2008, 54(5):876-887.
  • [35]Li W-X, Oono Y, Zhu J, He X-J, Wu J-M, Iida K, Lu X-Y, Cui X, Jin H, Zhu J-K: The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance. Plant Cell 2008, 20(8):2238-2251.
  • [36]Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible W-R: Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing. Plant Physiol 2009, 150(3):1541-1555.
  • [37]Combier JP, Frugier F, de Billy F, Boualem A, El-Yahyaoui F, Moreau S, Vernie T, Ott T, Gamas P, Crespi M, et al.: MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatula. Gene Dev 2006, 20(22):3084-3088.
  • [38]Beveridge CA, Mathesius U, Rose RJ, Gresshoff PM: Common regulatory themes in meristem development and whole-plant homeostasis. Curr Opin Plant Biol 2007, 10(1):44-51.
  • [39]Complainville A, Brocard L, Roberts I, Dax E, Sever N, Sauer N, Kondorosi A, Wolf S, Oparka K, Crespi M: Nodule Initiation Involves the Creation of a New Symplasmic Field in Specific Root Cells of Medicago Species. Plant Cell 2003, 15(12):2778-2791.
  • [40]Simon SA, Meyers BC, Sherrier DJ: MicroRNAs in the Rhizobia Legume Symbiosis. Plant Physiol 2009, 151(3):1002-1008.
  • [41]Shaff JE, Schultz BA, Craft EJ, Clark RT, Kochian LV: GEOCHEM-EZ: a chemical speciation program with greater power and flexibility. Plant Soil 2010, 330(1–2):207-214.
  • [42]Barker DGT, Pfaff D, Moreau E, Groves S, Ruffel M, Lepetit S, Whiteh F, Maillet RM, Nair Journet E: Growing M. truncatula: choice of substrates and growth conditions. In The Medicago truncatula handbook Edited by Mathesius UJE, Sumner LW. 2006. http://www.noble.org/medicago-handbook/ webcite
  • [43]Varkonyi-Gasic E, Wu RM, Wood M, Walton EF, Hellens RP: Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007., 3(12) BioMed Central Full Text
  • [44]Chen CF, Ridzon DA, Broomer AJ, Zhou ZH, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, et al.: Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 2005, 33(20):e179.
  • [45]Kalendar R, Lee D, Schulman AH: FastPCR Software for PCR Primer and Probe Desgin and Repeat Search. Genes, Genomes and Genomics 2009., 3(1) http://www.biocenter.helsinki.fi/bi/Programs/fastpcr.htm webcite
  • [46]Haynes JG, Czymmek KJ, Carlson CA, Veereshlingam H, Dickstein R, Sherrier DJ: Rapid analysis of legume root nodule development using confocal microscopy. New Phytol 2004, 163(3):661-668.
  • [47]Lullien V, Barker DG, Delajudie P, Huguet T: Plant Gene-Expression in Effective and Ineffective Root-Nodules of Alfalfa (Medicago-Sativa). Plant Mol Biol 1987, 9(5):469-478.
  • [48]Lopez-Millan AF, Ellis DR, Grusak MA: Effect of zinc and manganese supply on the activities of superoxide dismutase and carbonic anhydrase in Medicago truncatula wild type and raz mutant plants. Plant Sci 2005, 168(4):1015-1022.
  • [49]NRC NRC: Nutrient Requirements of Beef Cattle. Washington, DC: National Academy Press; 1996.
  • [50]Gupta UC (Ed): Deficient, Sufficient and Toxic Concentrations of Molybdenum in Crops. New York, NY, USA: Cambridge University Press; 1997.
  • [51]Majak W, Steinke D, McGillivray J, Lysyk T: Clinical signs in cattle grazing high molybdenum forage. J Range Manage 2004, 57(3):269-274.
  • [52]McBride MB, Richards BK, Steenhuis T, Spiers G: Molybdenum Uptake by Forage Crops Grown on Sewage Sludge-Amended Soils in the Field and Greenhouse. J Environ Qual 2000, 29(3):848-854.
  • [53]Ohara GW, Boonkerd N, Dilworth MJ: Mineral Constraints to Nitrogen-Fixation. Plant Soil 1988, 108(1):93-110.
  • [54]Frugier F, Poirier S, Satiat-Jeunemaitre B, Kondorosi A, Crespi M: A Kruppel-like zinc finger protein is involved in nitrogen-fixing root nodule organogenesis. Gene Dev 2000, 14(4):475-482.
  • [55]López-Millán AF, Ellis DR, Grusak MA: Effect of zinc and manganese supply on the activities of superoxide dismutase and carbonic anhydrase in Medicago truncatula wild type and raz mutant plants. Plant Sci 2005, 168(4):1015-1022.
  • [56]Vaughan D, Ord B: Influence of phenolic acids on morphological changes in roots of Pisum sativum. J Sci Food Agric 1990, 52(3):289-299.
  • [57]Römheld V, Marschner H: Iron deficiency stress induced morphological and physiological changes in root tips of sunflower. Physiol Plant 1981, 53(3):354-360.
  • [58]Inada S, Tominaga M, Shimmen T: Regulation of Root Growth by Gibberellin in Lemna minor. Plant Cell Physiol 2000, 41(6):657-665.
  • [59]Baskin TI, Wilson JE: Inhibitors of Protein Kinases and Phosphatases Alter Root Morphology and Disorganize Cortical Microtubules. Plant Physiol 1997, 113(2):493-502.
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