期刊论文详细信息
BMC Evolutionary Biology
Towards a comprehensive characterization of durum wheat landraces in Moroccan traditional agrosystems: analysing genetic diversity in the light of geography, farmers’ taxonomy and tetraploid wheat domestication history
Marie-Hélène Muller2  Pierre Roumet2  Ahmed Birouk1  Loubna Belqadi1  Morgane Ardisson2  Mustapha Arbaoui1  Lamyae Chentoufi1  Ali Sahri1 
[1] Département de Production, Protection et Biotechnologies Végétales, Institut Agronomique et Vétérinaire Hassan II, B.P. 6202, Rabat-Instituts, Rabat, Morocco;INRA, UMR 1334, Amélioration Génétique et Adaptation des Plantes méditerranéennes et tropicales (AGAP), 2 place Pierre Viala, Montpellier Cedex 1, F-34060, France
关键词: Durum wheat;    Landraces;    Variety names;    Traditional agrosystems;    Genetic diversity;   
Others  :  1121733
DOI  :  10.1186/s12862-014-0264-2
 received in 2014-07-10, accepted in 2014-12-11,  发布年份 2014
PDF
【 摘 要 】

Background

Crop diversity managed by smallholder farmers in traditional agrosystems is the outcome of historical and current processes interacting at various spatial scales, and influenced by factors such as farming practices and environmental pressures. Only recently have studies started to consider the complexity of these processes instead of simply describing diversity for breeding purposes. A first step in that aim is to add multiple references to the collection of genetic data, including the farmers’ varietal taxonomy and practices and the historical background of the crop.

Results

On the basis of interview data collected in a previous study, we sampled 166 populations of durum wheat varieties in two traditional Moroccan agrosystems, in the Pre-Rif and Atlas Mountains regions. Using a common garden experiment, we detected a high phenotypic variability on traits indicative of taxonomical position and breeding status, namely spike shape and plant height. Populations often combined modern (short) with traditional-like (tall) statures, and classical durum squared spike shape (5 flowers/spikelet) with flat spike shape (3 flowers/ spikelet) representative of primitive domesticated tetraploid wheat (ssp. dicoccum). By contrast, the genetic diversity assessed using 14 microsatellite markers was relatively limited. When compared to the genetic diversity found in a large collection of tetraploid wheat, it corresponded to free-threshing tetraploid wheat. Within Morocco, the two studied regions differed for both genetic diversity and variety names. Within regions, neither geography nor variety names nor even breeding status constituted strong barriers to gene exchange despite a few significant patterns.

Conclusions

This first assessment of morphological and genetic diversity allowed pointing out some important factors that may have influenced the structure and evolutionary dynamics of durum wheat in Morocco: the significance of variety names, the occurrence of mixtures within populations, the relative strength of seed exchange between farmers and local adaptation, as well as the fate of modern varieties once they have been introduced. Further, multidisciplinary studies at different spatial scales are needed to better understand these complex agrosystems of invaluable importance for food security.

【 授权许可】

   
2014 Sahri et al.; licensee BioMed Central.

【 预 览 】
附件列表
Files Size Format View
20150213010920151.pdf 2699KB PDF download
Figure 5. 61KB Image download
Figure 4. 68KB Image download
Figure 3. 66KB Image download
Figure 2. 36KB Image download
Figure 1. 73KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

Figure 5.

【 参考文献 】
  • [1]Evenson RE, Gollin D: Assessing the impact of the Green revolution. Science 2003, 300:758-762.
  • [2]Jarvis DI, Padoch C, Cooper HD: Biodiversity, agriculture, and ecosystem services. In Managing biodiversity in agricultural ecosystems. Edited by Jarvis DI, Padoch C, Cooper D. Columbia University Press, New York, USA; 2007:1-10.
  • [3]Kang SK, Post WM, Nichols JA, Wang D, West TO, Bandaru V, Izaurralde RC: Marginal lands: concept, assessment and management. J Agric Sci 2013, 5(5):129-139.
  • [4]Altieri MA: Linking ecologists and traditional farmers in the search for sustainable agriculture. Front Ecol Environ 2004, 2(1):35-42.
  • [5]Lin BB: Resilience in agriculture through crop diversification: adaptive management for environmental change. Bioscience 2011, 61(3):183-193.
  • [6]Newton AC, Akar T, Baresel JP, Bebeli PJ, Bettencourt E, Bladenopoulos KV, Czembor JH, Fasoula DA, Katsiotis A, Koutis K, Koutsika-Sotiriou M, Kovacs G, Larsson H, Pinheiro Carvalho de MAA, Rubiales D, Russell J, Dos Santos TMM, Vaz Patto MC: Cereal landraces for sustainable agriculture a review. Agron Sustain Dev 2010, 30:237-269.
  • [7]Bradshaw JE, Ramsay G: Utilisation of the commonwealth potato collection in potato breeding. Euphytica 2005, 146:9-19.
  • [8]Reynolds M, Dreccer F, Trethowan R: Drought-adaptive traits derived from wheat wild relatives and landraces. J Exp Bot 2007, 58(2):177-186.
  • [9]Sharma S, Upadhyaya HD, Varshney RK, Gowda CLL: Pre-breeding for diversification of primary gene pool and genetic enhancement of grain legumes. Front Plant Sci 2013, 4:309.
  • [10]Abay F, Bjornstad A: Specific adaptation of barley varieties in different locations in Ethiopia. Euphytica 2009, 167:181-195.
  • [11]Jarvis DI, Brown AHD, Cuong PH, Collado-Panduro L, Latournerie-Moreno L, Gyawali S, Tanto T, Sawadogo M, Mar I, Sadiki M, Hue NT, Arias-Reyes L, Balma D, Bajracharya J, Castillo F, Rijal D, Belqadi L, Rana R, Saidi S, Ouedraogo JT, Zangre R, Rhrib K, Chavez JL, Schoen D, Sthapit B, De Santis P, Fadda C, Hodgkin T: A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming community. Proc Natl Acad Sci U S A 2008, 105(14):5326-5331.
  • [12]Jarvis DI, Hodgkin T, Sthapit BR, Fadda C, Lopez-Noriega I: An heuristic framework for identifying multiple ways of supporting the conservation and use of traditional crop varieties within the agricultural production system. Crit Rev Plant Sci 2011, 30(1–2):125-176.
  • [13]Cai X, Fan J, Jiang Z, Basso B, Sala F, Spada A, Grassi F, Lu B-R: The puzzle of Italian rice origin and evolution: determining genetic divergence and affinity of rice germplasm from Italy and Asia. PLoS One 2013, 8(11):e80351.
  • [14]Odong TL, Jansen J, van Eeuwijk F, van Hintum TJL: Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation. Theor Appl Genet 2013, 126:289-305.
  • [15]Dyer GA, Taylor JE: A crop population perspective on maize seed system in Mexico. Proc Natl Acad Sci U S A 2008, 105(2):470-475.
  • [16]Leclerc C, Coppens d'Eeckenbrugge G: Social organization of crop genetic diversity. The G × E × S interaction model. Diversity 2012, 4:1-32.
  • [17]Delêtre M, McKey DB, Hodkinson TR: Marriage exchanges, seed exchanges, and the dynamics of manioc diversity. Proc Natl Acad Sci U S A 2011, 108(45):18249-18254.
  • [18]Deu M, Sagnard F, Chantereau J, Catalayud C, Hérault D, Mariac C, Pham J-L, Vigouroux Y, Kapran I, Traore PS, Mamadou A, Gerard B, Ndjeunga J, Bezançon G: Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers. Theor Appl Genet 2008, 116:903-913.
  • [19]Pusadee T, Jamjod S, Chiang Y-C, Rerkasem B, Schaal BA: Genetic structure and isolation by distance in a landrace of Thai rice. Proc Natl Acad Sci U S A 2009, 106(33):13880-13885.
  • [20]Mercer KL, Martinez-Vasquez A, Perales HR: Asymmetrical local adaptation of maize landraces along an altitudinal gradient. Evol Appl 2008, 1:489-500.
  • [21]Tiranti B, Negri V: Selective microenvironmental effects play a role in shaping genetic diversity and structure in a Phaseolus vulgaris L. landrace: implications for on-farm conservation. Mol Ecol 2007, 16:4942-4955.
  • [22]Mercer KL, Perales HR: Evolutionary response of landraces to climate change in centers of crop diversity. Evol Appl 2010, 3:480-493.
  • [23]Van Heerwaarden J, Hellin J, Visser RF, Van Eeuwijk FA: Estimating maize genetic erosion in modernized smallholder agriculture. Theor Appl Genet 2009, 119:875-888.
  • [24]Samberg LH, Fishman L, Allendorf FW: Population genetic structure in a social landscape: barley in a traditional Ethiopian agricultural system. Evol Appl 2013, 6:1133-1145.
  • [25]Bajracharya J, Rana RB, Gauchan D, Sthapit BR, Jarvis DI, Witcombe JR: Rice landrace diversity in Nepal. Socio-economic and ecological factors determining rice landrace diversity in three agro-ecozones of Nepal based on farm surveys. Genet Resour Crop Evol 2010, 57:1013-1022.
  • [26]Jensen HR, Belqadi L, De Santis P, Sadiki M, Jarvis DI, Schoen DJ: A case study of seed exchange networks and gene flow for barley (Hordeum vulgare subsp. vulgare) in Morocco. Genet Resour Crop Evol 2013, 60:1119-1138.
  • [27]Samberg LH, Shennan C, Zavaleta E: Farmer seed exchange and crop diversity in a changing agricultural landscape in the southern highlands of Ethiopia. Hum Ecol 2013, 41:477-485.
  • [28]Sadiki M, Jarvis DI, Rijal D, Bajracharya J, Hue NN, Camachi TC, Burgos-May LA, Sawadogo M, Balma D, Lope D, Arias L, Mar I, Karamura D, Williams D, Chavez-Servia JL, Sthapit B, Rao VR: Variety names: an entry point to crop genetic diversity and distribution in agroecosystems? In Managing biodiversity in agricultural ecosystems. Edited by Jarvis DI, Padoch C, Cooper D. Columbia University Press, New York, USA; 2007:34-76.
  • [29]Tsegaye S: Estimation of outcrossing rate in landraces of tetraploid wheat (Triticum turgidum L.). Plant Breed 1996, 115(3):195-197.
  • [30]Nesbitt M, Samuel D, Heller J: From staple crop to extinction? The archeology and history of the hulled wheat. In First International Workshop on Hulled Wheats. Edited by Padulosi S, Hammer K. IPGRI, Castelvecchio Pascoli Tuscany, Italy; 1996:41-100.
  • [31]Peleg Z, Fahima T, Korol AB, Abbo S, Saranga Y: Genetic analysis of wheat domestication and evolution under domestication. J Exp Bot 2011, 62(14):5051-5061.
  • [32]Simonetti MC, Bellomo MP, Laghetti G, Perrino P, Simeone R, Blanco A: Quantitative trait loci influencing free-threshing habit in tetraploid wheats. Genet Resour Crop Evol 1999, 46:267-271.
  • [33]Simons KJ, Fellers JP, Trick HN, Zhang Z, Tai Y-S, Gill BS, Faris JD: Molecular characterization of the major wheat domestication Gene Q. Genetics 2006, 172:547-555.
  • [34]Peng JH, Sun D, Nevo E: Domestication evolution, genetics and genomics in wheat. Mol Breed 2011, 28:281-301.
  • [35]Tzarfati R, Saranga Y, Barak V, Gopher A, Korol A, Abbo S: Threshing efficiency as an incentive for rapid domestication of emmer wheat. Ann Bot 2013, 112:829-837.
  • [36]Matsuoka Y: Evolution of polyploid Triticum wheats under cultivation: The role of domestication, natural hybridization and allopolyploid speciation in their diversification. Plant Cell Physiol 2011, 52(5):750-764.
  • [37]Araus JL, Ferrio JP, Buxo R, Voltas J: The historical perspective of dryland agriculture: lessons learned from 10 000 years of wheat cultivation. J Exp Bot 2007, 58(2):131-145.
  • [38]Haudry A, Cenci A, Ravel C, Bataillon T, Brunel D, Poncet C, Hochu I, Poirier S, Santoni S, Glémin S, David J: Grinding up wheat: a massive loss of nucleotide diversity since domestication. Mol Biol Evol 2007, 24(7):1506-1517.
  • [39]Thuillet A-C, Bataillon T, Poirier S, Santoni S, David JL: Estimation of long-term effective population size through the history of durum wheat using microsatellite data. Genetics 2005, 169:1589-1599.
  • [40]Laido G, Mangini G, Taranto F, Gadaleta A, Blanco A, Cattivelli L, Marone D, Mastrangelo AM, Papa R, De Vita P: Genetic diversity and population structure of tetraploid wheats (Triticum turgidum L.) estimated by SSR, DArT and pedigree data. PLOS One 2013, 8(6):e67280.
  • [41]Oliveira HR, Campana MG, Jones H, Hunt HV, Leigh F, Redhouse DI, Lister DL, Jones MK: Tetraploid wheat landraces in the Mediterranean basin: taxonomy, evolution and genetic diversity. PLoS One 2012, 7(5):e37063.
  • [42]Hedden P: The genes of the green revolution. Trends Genet 2002, 19(1):5-9.
  • [43]Szabo AT, Hammer K: Notes on the taxonomy of farro: Triticum monococcum, T. dicoccon and T. spelta. In Hulled wheats, promoting the conservation and used of underutilized and neglected crops. Edited by Padulosi S, Hammer K, Heller J. IPGRI, Rome; 1996:2-40.
  • [44]Miège M: Sur la présence au Maroc de Triticum diococcum Sch. Bull Soc Sci Nat Maroc 1925, 5(3):98-109.
  • [45]Zaharieva M, Ayana NG, Al Hakimi A, Misra SC, Monneveux P: Cultivated emmer wheat (Triticum dicoccon Schrank), an old crop with promising future: a review. Genet Resour Crop Evol 2010, 57:937-962.
  • [46]Kehel Z, Garcia-Ferrer A, Nachit MM: Using bayesian and eigen approaches to study spatial genetic structure of Moroccan and Syrian durum wheat landraces. Am J Mol Biol 2013, 3:17-31.
  • [47]Teklu Y, Hammer K, Röder M: Simple sequence repeats marker polymorphism in emmer wheat (Triticum dicoccon Schrank): analysis of genetic diversity and differentiation. Genet Resour Crop Evol 2007, 54:543-554.
  • [48]Chentoufi L, Sahri A, Arbaoui M, Belqadi L, Birouk A, Roumet P, Muller M-H: Anchoring durum wheat diversity in the reality of traditional agricultural systems: varieties, seed management, and farmers’ perception in two Moroccan regions. J Ethnobiol Ethnomed 2014, 10:58. BioMed Central Full Text
  • [49]Jombart T, Devillard S, Balloux F: Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet 2010, 11:94. BioMed Central Full Text
  • [50]Mokuwa A, Nuijten E, Okry F, Teeken B, Maat H, Richards P, Struik PC: Processes underpinning development and maintenance of diversity in rice in West Africa: evidence from combining morphological and molecular markers. PLoS One 2014, 9(1):e85953.
  • [51]Abebe TD, Léon J: Spatial and temporal genetic analyses of Ethiopian barley (Hordeum vulgare L.) landraces reveal the absence of a distinct population structure. Genet Resour Crop Evol 2013, 60:1547-1558.
  • [52]Chakanda R, Van Treuren R, Visser B, van den Berg R: Analysis of genetic diversity in farmers’ rice varieties in Sierra Leone using morphological and AFLP markers. Genet Resour Crop Evol 2013, 60:1237-1250.
  • [53]Bonneuil C, Goffaux R, Bonnin I, Montalent P, Hamon C, Balfourier F, Goldringer I: A new integrative indicator to assess crop genetic diversity. Ecol Indic 2012, 23:280-289.
  • [54]Pautasso M, Aistara G, Barnaud A, Caillon S, Clouvel P, Coomes OT, Delêtre M, Demeulenaere E, De Santis P, Döring T, Eloy L, Emperaire L, Garine E, Goldringer I, Jarvis DI, Joly HI, Leclerc C, Louafi S, Martin P, Massol F, McGuire S, McKey D, Padoch C, Soler C, Thomas M, Tramontini S: Seed exchange networks for agrobiodiversity conservation. A review. Agron Sustain Dev 2013, 33:151-175.
  • [55]Barnaud A, Trigueros G, McKey D, Joly H: High outcrossing rates in fields with mixed sorghum landraces: how are landraces maintained? Heredity 2008, 101:445-452.
  • [56]Fraser JA, Alves-Pereira A, Junqueira AB, Peroni N, Clement CR: Convergent adaptations: bitter manioc cultivation systems in fertile anthropogenic dark earths and floodplain soils in central Amazonia. PLoS One 2012, 7(8):e43636.
  • [57]Labeyrie V, Deu M, Barnaud A, Catalayud C, Buiron M, Wambugu P, Manel S, Glaszmann JC, Leclerc C: Influence of Ethnolinguistic diversity on the sorghum genetic patterns in subsistence farming systems in eastern Kenya. PLoS One 2014, 9(3):e92178.
  • [58]Bellucci E, Bitocchi E, Rau D, Nanni L, Ferradini N, Giardini A, Rodriguez M, Attene G, Papa R: Population structure of barley landrace populations and gene-flow with modern varieties. PLoS One 2013, 8(12):e83891.
  • [59]Bitocchi E, Bellucci E, Giardini A, Rau D, Rodriguez M, Biagetti E, Santilocchi R, Spagnoletti Zeuli PL, Gioia T, Logozzo G, Attene G, Nanni L, Papa R: Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes. New Phytol 2013, 197:300-313.
  • [60]Steele KA, Gyawali S, Joshi KD, Shrestha P, Sthapit BR, Witcombe JR: Has the introduction of modern rice varieties changed rice genetic diversity in a high-altitude region of Nepal? Field Crop Res 2009, 113:24-30.
  • [61]Elias M, Lenoir H, McKey D: Propagule quantity and quality in traditional Makushi farming of cassava (Manihot esculenta): a case study for understanding domestication and evolution of vegetatively propagated crops. Genet Resour Crop Evol 2007, 54:99-115.
  • [62]Dolezel J, Binarova P, Lucretti S: Analysis of nuclear DNA content in plant cells by flow cytometry. Biol Plant 1989, 31:113-120.
  • [63]Thuillet A-C, Roumet P, Bordat A, Tollon C, Poux G, Santoni S, David JL: Déperdition ancienne et restauration moderne de la diversité génétique du blé. Actes du BRG 2008, 7:405-422.
  • [64]El Mousadik A, Petit RJ: High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor Appl Genet 1996, 92:832-839.
  • [65]Nei M: Molecular Evolutionary Genetics. Columbia Univeristy Press, New York; 1987.
  • [66]Goudet J: FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www2.unil.ch/popgen/softwares/fstat.htm.
  • [67]Jombart T: adegenet: a R package for the multivariate analysis of genetic markers. Bioinformatics 2008, 24(11):1403-1405.
  • [68]Excoffier L, Laval LG, Schneider S: Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinformatics Online 2005, 1:47-50.
  • [69]Weir BS: Genetic data analysis II. Sinauer Associates Inc., Sunderland; 1996.
  • [70]Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F: GENETIX 4.02, logiciel sous WindowsTMpour la génétique des populations. In. Montpellier, France: Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II; 2001.
  • [71]Perrier X, Flori A, Bonnot F: Data analysis methods. In Genetic diversity of cultivated tropical plants. Edited by Hamon P, Seguin M, Perrier X, Glaszmann JC. Enfield, Science Publishers, Montpellier, France; 2003:43-76.
  文献评价指标  
  下载次数:16次 浏览次数:13次