BMC Genetics | |
Analysis of ancient human mitochondrial DNA from the Xiaohe cemetery: insights into prehistoric population movements in the Tarim Basin, China | |
Hui Zhou5  Hong Zhu5  Idelisi Abuduresule2  Wenying Li2  Yongbin Zhao4  Hongjie Li5  Erika Hagelberg1  Chao Ning3  Chunxiang Li5  | |
[1] Department of Biosciences, University of Oslo, Oslo, 0316, Norway;Xinjiang Cultural Relics and Archaeology Institute, Ürümchi 830000, P. R. China;College of Life Science, Jilin University, Changchun 130023, P. R. China;Life Science College, Jilin Normal University, Siping 136000, P. R.China;Ancient DNA Laboratory, Research Center for Chinese Frontier Archaeology, Jilin University, Changchun 130012, P. R. China | |
关键词: Mitochondrial DNA; Tarim Basin; Human populations; Mummies; Ancient DNA; | |
Others : 1218916 DOI : 10.1186/s12863-015-0237-5 |
|
received in 2015-04-20, accepted in 2015-06-22, 发布年份 2015 | |
【 摘 要 】
Background
The Tarim Basin in western China, known for its amazingly well-preserved mummies, has been for thousands of years an important crossroad between the eastern and western parts of Eurasia. Despite its key position in communications and migration, and highly diverse peoples, languages and cultures, its prehistory is poorly understood. To shed light on the origin of the populations of the Tarim Basin, we analysed mitochondrial DNA polymorphisms in human skeletal remains excavated from the Xiaohe cemetery, used by the local community between 4000 and 3500 years before present, and possibly representing some of the earliest settlers.
Results
Xiaohe people carried a wide variety of maternal lineages, including West Eurasian lineages H, K, U5, U7, U2e, T, R*, East Eurasian lineages B, C4, C5, D, G2a and Indian lineage M5.
Conclusion
Our results indicate that the people of the Tarim Basin had a diverse maternal ancestry, with origins in Europe, central/eastern Siberia and southern/western Asia. These findings, together with information on the cultural context of the Xiaohe cemetery, can be used to test contrasting hypotheses of route of settlement into the Tarim Basin.
【 授权许可】
2015 Li et al.
【 预 览 】
Files | Size | Format | View |
---|---|---|---|
20150714013747939.pdf | 1698KB | download | |
Figure 1. | 54KB | Image | download |
Fig. 3. | 88KB | Image | download |
Fig. 2. | 88KB | Image | download |
Fig. 1. | 110KB | Image | download |
【 图 表 】
Fig. 1.
Fig. 2.
Fig. 3.
Figure 1.
【 参考文献 】
- [1]Yao YG, Kong QP, Wang CY, Zhu CL, Zhang YP. Different matrilineal contributions to genetic structure of ethnic groups in the Silk Road region in China. Mol Biol Evol. 2004; 21:2265-2280.
- [2]Comas D, Calafell F, Mateu E, Perez-Lezaun A, Bosch E, Martinez-Arias R et al.. Trading genes along the Silk Road: mtDNA sequences and the origin of Central Asian populations. Am J Hum Genet. 1998; 63:1824-1838.
- [3]Cui Y, Li C, Gao S, Xie C, Zhou H. Early Eurasian migration traces in the Tarim Basin revealed by mtDNA polymorphisms. Am J Phys Anthropol. 2010; 142:558-564.
- [4]Mair VH. Genes, Geography, and Glottochronology: The Tarim Basin during Late Prehistory and History. Institute for the Study of Man, Washington, D.C; 2005.
- [5]Hemphill BE, Mallory JP. Horse-mounted invaders from the Russo-Kazakh steppe or agricultural colonists from western Central Asia? A craniometric investigation of the Bronze Age settlement of Xinjiang. Am J Phys Anthropol. 2004; 124:199-222.
- [6]Romgard J. Questions of Ancient Human Settlements in Xinjiang and the Early Silk Road Trade. Sino-Platonic Papers. Mair VH, editor. University of Pennsylvania, Philadelphia, PA; 2008.
- [7]Barber EJW. Bronze Age Cloth and Clothing of the Tarim Basin: The Kroran(Loulan) and Qumul(Hami) Evidence. Institute for the Study of Man in collaboration with University of Pennsylvania Museum Publications, Washington, D.C; 1998.
- [8]Han KX. The Physical Anthropology of the Ancient Populations of the Tarim Basin and Surrounding Areas. Institute for the Study of Man in collaboration with University of Pennsylvania Museum Publications, Washington D.C; 1998.
- [9]Mallory JP, Mair VH. The Tarim Mummies: Ancient China and the Mystery of the Earliest Peoples from the West. Thames and Hudson, London; 2000.
- [10]Cui YQ, Gao SZ, Xie CZ, Zhang QC, Wang HJ, Zhu H et al.. Analysis of the matrilineal genetic structure of population in the early Iron Age from Tarim Basin, Xinjiang, China. Chinese Sci Bull. 2009; 54:3916-3923.
- [11]Han KX. Physical Anthropological Studies on the Racial Affinities of the Inhabitants of Ancient Xinjiang. Xinjiang People’s Publishing House Wang BH, Urumchi; 2001.
- [12]Kuzmina EE. Cultural Connections of the Tarim Basin People and Pastoralists of the Asian Steppes in the Bronze Age. The Institute for the Study of Man in collaboration with University of Pennsylvania Museum Publications, Washington D.C; 1998.
- [13]Svyatko SV, Mallory J, Murphy E, Polyakov AV, Reimer P, Schulting R. New radiocarbon dates and a review of the chronology of prehistoric populations from the Minusinsk Basin, Southern Siberia, Russia. Radiocarbon. 2009; 51:243-274.
- [14]Anthony DW. The Horse, the Wheel, and Language: How Bronze-Age Riders from the Eurasian Steppes Shaped the Modern World. Princeton University Press, Princeton; 2007.
- [15]Thornton CP, Schurr TG. Gene, language, and culture: an example from the Tarim Basin. Oxford J Archeol. 2004; 23:83-106.
- [16]Chen KT, Hiebert FT. The late prehistory of Xinjiang in relation to its neighbors. J World Prehistory. 1995; 9:243-300.
- [17]Hiebert FT. Origins of the Bronze Age Oasis Civilization in Central Asia. Peabody Museum of Archaeology and Ethnology, Harvard University, MA; 1994.
- [18]Cui YQ, Xu Y, Yang YD, Xie CZ, Zhu H, Zhou H. Mitochondrial DNA polymorphism analysis of district of Lubunour at the Bronze Age in Xinjiang. Journal of Jilin University (in Chinese). 2004; 30:650-652.
- [19]Mair VH. The Rediscovery and Complete Excavation of Ördek’s Necropolis. University of Pennsylvania, ETATS-UNIS, Washington, D.C; 2006.
- [20]Abuduresule I, Li WY, Hu XJ. A brief excavation report on Xiaohe graveyard located in Luobupo, Xinjiang Autonomous Region. Cultural Relics. 2007; 10:4-42.
- [21]Li WY, Abuduresule I, Liu YS. Big discovery of Xiaohe cemetery. Natl Geogr. 2007; 8:152-163.
- [22]Flad R, Li SC, Wu XH, Zhao ZJ. Early wheat in China: results from new studies at Donghuishan in the Hexi Corridor. The Holocene. 2010; 20:955-965.
- [23]Li C, Li H, Cui Y, Xie C, Cai D, Li W et al.. Evidence that a West–east admixed population lived in the Tarim Basin as early as the early Bronze Age. BMC Biol. 2010; 8:15. BioMed Central Full Text
- [24]Gilbert MT, Bandelt HJ, Hofreiter M, Barnes I. Assessing ancient DNA studies. Trends Ecol Evol. 2005; 20:541-544.
- [25]Malyarchuk B, Grzybowski T, Derenko M, Perkova M, Vanecek T, Lazur J et al.. Mitochondrial DNA phylogeny in Eastern and Western Slavs. Mol Biol Evol. 2008; 25:1651-1658.
- [26]Van Oven M, Kayser M. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 2009; 30:386-394.
- [27]Behar DM, Van Oven M, Rosset S, Metspalu M, Loogvali EL, Silva NM et al.. A “Copernican” reassessment of the human mitochondrial DNA tree from its root. Am J Hum Genet. 2012; 90:675-684.
- [28]Stone AC, Milner GR, Paabo S, Stoneking M. Sex determination of ancient human skeletons using DNA. Am J Phys Anthropol. 1996; l 99:231-238.
- [29]Haas-Rochholz H, Weiler G. Additional primer sets for an amelogenin gene PCR-based DNA-sex test. Int J Legal Med. 1997; 110:312-315.
- [30]Kivisild T, Tolk HV, Parik J, Wang Y, Papiha SS, Bandelt HJ et al.. The emerging limbs and twigs of the East Asian mtDNA tree. Mol Biol Evol. 2002; 19:1737-1751.
- [31]Richards M, Macaulay V, Hickey E, Vega E, Sykes B, Guida V et al.. Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet. 2000; 67:1251-1276.
- [32]Derenko M, Malyarchuk B, Grzybowski T, Denisova G, Dambueva I, Perkova M et al.. Phylogeographic analysis of mitochondrial DNA in northern Asian populations. Am J Hum Genet. 2007; 81:1025-1041.
- [33]Torroni A, Richards M, Macaulay V, Forster P, Villems R, Norby S et al.. mtDNA haplogroups and frequency patterns in Europe. Am J Hum Genet. 2000; 66:1173-1177.
- [34]Dubut V, Chollet L, Murail P, Cartault F, Beraud-Colomb E, Serre M et al.. mtDNA polymorphisms in five French groups: importance of regional sampling. Eur J Hum Genet. 2004; 12:293-300.
- [35]Sarkissian CD, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S et al.. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genet. 2013; 9: Article ID e1003296
- [36]Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V, Adler CJ et al.. Ancient DNA from European early neolithic farmers reveals their near eastern affinities. PLoS Biol. 2010; 8(11): Article ID e1000536
- [37]Lalueza-Fox C, Sampietro ML, Gilbert MT, Castri L, Facchini F, Pettener D et al.. Unravelling migrations in the steppe: mitochondrial DNA sequences from ancient Central Asians. Proc Biol Sci. 2004; 271:941-947.
- [38]Hollard C, Keyser C, Giscard PH, Tsagaan T, Bayarkhuu N, Bemmann J et al.. Strong geneticadmixture in the Altai at the Middle Bronze Age revealed by uniparental and ancestryinformative markers. Forensic Sci Int Genet. 2014; 12:199-207.
- [39]Keyser C, Bouakaze C, Crubezy E, Nikolaev VG, Montagnon D, Reis T et al.. Ancient DNA provides new insights into the history of south Siberian Kurgan people. Hum Genet. 2009; 126:395-410.
- [40]Wilde S, Timpson A, Kirsanow K, Kaiser E, Kayser M, Unterländer M et al.. Direct evidence for positive selection of skin, hair, and eye pigmentation in Europeans during the last 5,000 y. Proc Natl Acad Sci. 2014; 111:4832-4837.
- [41]Brandt G, Haak W, Adler CJ, Roth C, Szécsényi-Nagy A, Karimnia S et al.. Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity. Science. 2013; 342(6155):257-261.
- [42]Bramanti B, Thomas MG, Haak W, Unterlaender M, Jores P, Tambets K et al.. Genetic discontinuity between local hunter-gatherers and central Europe’s first farmers. Science. 2009; 326:137-140.
- [43]Mooder KP, Schurr TG, Bamforth FJ, Bazaliiski VI, Savel’ev NA. Population affinities of Neolithic Siberians: a snapshot from prehistoric Lake Baikal. Am J Phys Anthropol. 2006; 129:349-361.
- [44]Gao SZ, Zhang Y, Wei D, Li HJ, Zhao YB, Cui YQ et al.. Ancient DNA reveals a migration of the ancient Di-qiang populations into Xinjiang as early as the early Bronze Age. Am J Phys Anthropol. 2015; 157:71-80.
- [45]Metspalu M, Kivisild T, Metspalu E, Parik J, Hudjashov G, Kaldma K et al.. Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genet. 2004; 5:26. BioMed Central Full Text
- [46]Kivisild T, Rootsi S, Metspalu M, Mastana S, Kaldma K, Parik J et al.. The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations. Am J Hum Genet. 2003; 72:313-332.
- [47]Abu-Amero KK, Larruga JM, Cabrera VM, Gonzalez AM. Mitochondrial DNA structure in the Arabian Peninsula. BMC Evol Biol. 2008; 8:45. BioMed Central Full Text
- [48]Thangaraj K, Chaubey G, Singh VK, Vanniarajan A, Thanseem I, Reddy AG et al.. In situ origin of deep rooting lineages of mitochondrial Macrohaplogroup ‘M’ in India. BMC Genomics. 2006; 7:151. BioMed Central Full Text
- [49]Derenko M, Malyarchuk B, Grzybowski T, Denisova G, Rogalla U, Perkova M et al.. Origin and post-glacial dispersal of mitochondrial DNA haplogroups C and D in northern Asia. PLoS ONE. 2010; 5: Article ID e15214
- [50]Starikovskaya EB, Sukernik RI, Derbeneva OA, Volodko NV, Ruiz-Pesini E, Torroni A et al.. Mitochondrial DNA diversity in indigenous populations of the southern extent of Siberia, and the origins of Native American haplogroups. Ann Hum Genet. 2005; 69:67-89.
- [51]Pimenoff VN, Comas D, Palo JU, Vershubsky G, Kozlov A, Sajantila A. Northwest Siberian Khanty and Mansi in the junction of West and East Eurasian gene pools as revealed by uniparental markers. Eur J Hum Genet. 2008; 16:1254-1264.
- [52]Ricaut FX, Fedoseeva A, Keyser-Tracqui C, Crubezy E, Ludes B. Ancient DNA analysis of human Neolithic remains found in northeastern Siberia. Am J Phys Anthropol. 2005; 126:458-462.
- [53]Molodin VI, Pilipenko AS, Romaschenko AG, Zhuravlev AA, Trapezov RO, Chikisheva TA et al.. Human Migrations in the Southern Region of the West Siberian Plain during the Bronze Age: Archaeological, Palaeogenetic and Anthropological Data. In: Population Dynamics in Prehistory and Early History. 2012.93-112.
- [54]Zhang F, Xu Z, Tan J, Sun Y, Xu B, Li S et al.. Prehistorical East–west admixture of maternal lineages in a 2,500-year-old population in Xinjiang. Am J Phys Anthropol. 2010; 142:314-320.
- [55]Gao SZ, Yang YD, Xu Y, Zhang QC, Zhu H, Zhou H. Tracing the genetic history of the Chinese people: mitochondrial DNA analysis of a Neolithic population from the Lajia site. Am J Phys Anthropol. 2007; 133:1128-1136.
- [56]Keyser-Tracqui C1, Crubézy E, Ludes B. Nuclear and mitochondrial DNA analysis of a 2,000-Year-Old Necropolis in the Egyin Gol Valley of Mongolia. Am J Hum Genet. 2003; 73:247-260.
- [57]Cai D, Sun Y, Tang Z, Hu S, Li W, Zhao X et al.. The origins of Chinese domestic cattle as revealed by Ancient DNA analysis. J Archaeol Sci. 2014; 41:423-434.
- [58]Spengler RN, Cerasetti B, Tengberg M, Cattani M, Rouse LM. Agriculturalists and pastoralists: bronze age economy of the Murghab alluvial fan, southern Central Asia. Veget Hist Archaeobot. 2014; 23:805-820.
- [59]Li C, Lister DL, Li H, Xu Y, Cui Y, Bower MA et al.. Ancient DNA analysis of desiccated wheat grains excavated from a bronze age cemetery in Xinjiang. J Archaeol Sci. 2011; 38:115-118.