期刊论文详细信息
BMC Genetics
Karyotypic diversification in Mytilus mussels (Bivalvia: Mytilidae) inferred from chromosomal mapping of rRNA and histone gene clusters
Juan J Pasantes2  Paloma Morán2  Concepción Pérez-García1 
[1] Ifremer, Department of Biogeochemistry and Ecotoxicology, Laboratory of Ecotoxicology, Rue de l’Ile d’Yeu, BP 21105, F-44311 Nantes Cedex 03, France;Dpto. Bioquímica, Xenética e Inmunoloxía, Universidade de Vigo, E-36310 Vigo, Spain
关键词: Fibre-FISH;    Histone genes, Ribosomal RNA genes;    Fluorescent in situ hybridization;    Chromosome;    Mytilus;   
Others  :  863122
DOI  :  10.1186/1471-2156-15-84
 received in 2014-04-30, accepted in 2014-07-10,  发布年份 2014
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【 摘 要 】

Background

Mussels of the genus Mytilus present morphologically similar karyotypes that are presumably conserved. The absence of chromosome painting probes in bivalves makes difficult verifying this hypothesis. In this context, we comparatively mapped ribosomal RNA and histone gene families on the chromosomes of Mytilus edulis, M. galloprovincialis, M. trossulus and M. californianus by fluorescent in situ hybridization (FISH).

Results

Major rRNA, core and linker histone gene clusters mapped to different chromosome pairs in the four taxa. In contrast, minor rRNA gene clusters showed a different behavior. In all Mytilus two of the 5S rDNA clusters mapped to the same chromosome pair and one of them showed overlapping signals with those corresponding to one of the histone H1 gene clusters. The overlapping signals on mitotic chromosomes became a pattern of alternate 5S rRNA and linker histone gene signals on extended chromatin fibers. Additionally, M. trossulus showed minor and major rDNA clusters on the same chromosome pair.

Conclusion

The results obtained suggest that at least some of the chromosomes bearing these sequences are orthologous and that chromosomal mapping of rRNA and histone gene clusters could be a good tool to help deciphering some of the many unsolved questions in the systematic classification of Mytilidae.

【 授权许可】

   
2014 Pérez-García et al.; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Distel D: Phylogenetic relationships among Mytilidae (Bivalvia): 18S rRNA data suggest convergence in mytilid body plans. Mol Phylogenet Evol 2000, 15:25-33.
  • [2]Huber M: Compendium of Bivalves. A Full-Color Guide to 3300 of the World’s Marine Bivalves. A Status on Bivalvia after 250 years of Research. Hackenheim: ConchBooks; 2010.
  • [3]Gardner JPA, Thompson RJ: Influence of genotype and geography on shell shape and morphometric trait variation among North Atlantic blue mussel (Mytilus spp.) populations. Biol J Linn Soc 2009, 96:875-897.
  • [4]Gosling EM: Speciation and Species Concepts in the Marine Environment. In Genetics and Evolution of Aquatic Organisms. Edited by Beaumont AR. London: Chapman and Hall; 1994:1-15.
  • [5]Thiriot-Quiévreux C: Advances in Cytogenetics of Aquatic Organisms. In Genetics and Evolution of Aquatic Organisms. Edited by Beaumont AR. London: Chapman and Hall; 1994:369-388.
  • [6]Moore MN, Lowe DL, Livingstone DR, Dixon DR: Molecular and cellular indices of pollutant effects and their use in environmental impact assessment. Wat Sci Technol (Plymouth) 1986, 18:223-232.
  • [7]Méndez J, Pasantes JJ, Martínez-Expósito MJ: Banding pattern of mussel (Mytilus galloprovincialis) chromosomes induced by 2xSSC/Giemsa-stain treatment. Mar Biol 1990, 106:375-377.
  • [8]Martínez-Expósito MJ, Pasantes JJ, Méndez J: Proliferation kinetics of mussel (Mytilus galloprovincialis) gill cells. Mar Biol 1994, 120:41-45.
  • [9]Martínez-Lage A, González-Tizón A, Méndez J: Characterization of different chromatin types in Mytilus galloprovincialis L. after C-banding, fluorochrome and restriction endonuclease treatments. Heredity 1994, 72:242-249.
  • [10]Thiriot-Quiévreux C: Review of the literature on bivalve cytogenetics in the last ten years. Cah Biol Mar 2002, 43:17-26.
  • [11]Guo X, Wang Y, Xu Z: Genomic Analyses using Fluorescence In Situ Hybridization. In Aquaculture Genome Technologies. Edited by Liu Z. Oxford: Blackwell Publishing; 2007:289-311.
  • [12]Leitão A, Chaves R: Banding for Chromosomal Identification in Bivalves: A 20-year History. In Aquaculture 1. Dynamic Biochemistry, Process Biotechnology and Molecular Biology 2 (Special Issue 1). Edited by Russo R. Global Science Books; 2008:44-49. (http://www.globalsciencebooks.info/Journals/images/GSB_Journal_Information_Stats.pdf webcite)
  • [13]Long EO, Dawid IB: Repeated genes in eukaryotes. Annu Rev Biochem 1980, 49:727-764.
  • [14]Dixon DR, McFadzen IRB, Sisley K: Heterochromatic marker regions (nucleolar organisers) in the chromosomes of the common mussel, Mytilus edulis (Mollusca: Pelecypoda). J Exp Mar Biol Ecol 1986, 97:205-212.
  • [15]Insua A, Labat JP, Thiriot-Quievreux C: Comparative analysis of karyotypes and nucleolar organizer regions in different populations of Mytilus trossulus, Mytilus edulis and Mytilus galloprovincialis. J Moll Stud 1994, 60:359-370.
  • [16]Martínez-Expósito MJ, Pasantes JJ, Méndez J: NOR activity in larval and juvenile mussels (Mytilus galloprovincialis Lmk.). J Exp Mar Biol Ecol 1994, 175:155-165.
  • [17]Martínez-Lage A, González-Tizón A, Méndez J: Chromosomal markers in three species of the genus Mytilus (Mollusca: Bivalvia). Heredity 1995, 74:369-375.
  • [18]Martínez-Lage A, González-Tizón A, Méndez J: Chromosome differences between European mussel populations (genus Mytilus). Caryologia 1996, 1996(49):343-355.
  • [19]Martínez-Expósito MJ, Méndez J, Pasantes JJ: Analysis of NORs and NOR-associated heterochomatin in the mussel Mytillus galloprovincialis Lmk. Chromosome Res 1997, 5:268-273.
  • [20]Martínez-Lage A, González-Tizón AM, Ausió J, Méndez J: Karyotypes and Ag-NORs of the mussels Mytilus californianus and M. trossulus from the Pacific Canadian coast. Aquaculture 1997, 153:239-249.
  • [21]González-Tizón AM, Martínez-Lage A, Rego I, Ausio J, Méndez J: DNA content, karyotypes, and chromosomal location of 18S–5.8S–28S ribosomal loci in some species of bivalve molluscs from the Pacific Canadian coast. Genome 2000, 43:1065-1072.
  • [22]Insua A, Freire R, Ríos R, Méndez J: The 5S rDNA of mussels Mytilus galloprovincialis and M. edulis: sequence, variation and chromosomal location. Chromosome Res 2001, 9:495-505.
  • [23]Eirín-López JM, González-Romero R, Dryhurst D, Méndez J, Ausió J: Long-Term Evolution of Histone Families: Old Notions and New Insights into their Mechanisms of Diversification Across Eukaryotes. In Evolutionary Biology. Edited by Pontarotti P. Berlin: Springer-Verlag; 2009:139-162.
  • [24]Drabent B, Kim JS, Albig W, Prats E, Cornudella L, Doenecke D: Mytilus edulis histone gene clusters containing only H1 genes. J Mol Evol 1999, 49:645-655.
  • [25]Albig W, Warthorst U, Drabent B, Prats E, Cornudella L, Doenecke D: Mytilus edulis core histone genes are organized in two clusters devoid of linker histone genes. J Mol Evol 2003, 56:597-606.
  • [26]Eirín-López JM, González-Tizón AM, Martínez A, Méndez J: Molecular and evolutionary analysis of mussel histone genes (Mytilus spp): possible evidence of an “orphon origin” for H1 histone genes. J Mol Evol 2002, 55:272-283.
  • [27]Eirín-López JM, Ruiz MF, González-Tizón AM, Martínez A, Sánchez L, Méndez J: Molecular evolutionary characterization of the mussel Mytilus histone multigene family: first record of a tandemly repeated unit of a five histone genes containing an H1 subtype whit “orphon” features. J Mol Evol 2004, 58:131-144.
  • [28]Torreiro A, Martínez-Expósito MJ, Trucco MI, Pasantes JJ: Cytogenetics in Brachidontes rodriguezi d’Orb (Bivalvia, Mytilidae). Chromosome Res 1999, 7:49-55.
  • [29]Vitturi R, Gianguzza P, Colomba MS, Riggio S: Cytogenetic characterization of Brachidontes pharaonis (Fisher P, 1870): Karyotype, banding and fluorescent in situ hybridization (FISH) (Mollusca: Bivalvia: Mytilidae). Ophelia 2000, 52:213-220.
  • [30]Pérez-García C, Guerra-Varela J, Morán P, Pasantes JJ: Chromosomal mapping of rRNA genes, core histone genes and telomeric sequences in Brachidontes puniceus and Brachidontes rodriguezi (Bivalvia: Mytilidae). BMC Genet 2010, 11:109.
  • [31]Muhammed Zafar Iqbal AN, Khan MS, Goswami U: Cytogenetic studies in green mussel, Perna viridis (Mytiloida: Pteriomorphia), from West Coast of India. Mar Biol 2008, 153:987-993.
  • [32]Pérez-García C, Cambeiro JM, Morán P, Pasantes JJ: Chromosomal mapping of rDNAs, core histone genes and telomeric sequences in Perumytilus purpuratus (Bivalvia: Mytilidae). J Exp Mar Biol Ecol 2010, 395:199-205.
  • [33]Pérez-García C, Morán P, Pasantes JJ: Cytogenetic characterization of the invasive mussel species Xenostrobus securis Lmk. (Bivalvia: Mytilidae). Genome 2011, 54:771-778.
  • [34]Stults DM, Killen MW, Pierce HH, Pierce AJ: Genomic architecture and inheritance of human ribosomal RNA gene clusters. Genome Res 2008, 18:13-18.
  • [35]Cruces J, Díaz-Guerra M, Gil I, Renart J: The 5S rRNA-histone repeat in the crustacean Artemia: structure, polymorphism and variation of the 5S rRNA segment in different populations. Nucleic Acids Res 1989, 17:6283-6297.
  • [36]Barzotti R, Pellicia F, Bucciarelli E, Rocchi A: Organization, nucleotide sequence and chromosomal mapping of a tandemly repeated unit containing the four core histone genes and 5S rRNA gene in an isopod crustacean species. Genome 2000, 43:341-345.
  • [37]Drouin G, Moniz de Sá M: The concerted evolution of 5S ribosomal genes linked to the repeat units of other multigene families. Mol Biol Evol 1995, 12:481-493.
  • [38]Ahmed M, Sparks AK: Chromosome number, structure and autosomal polymorphism in the marine mussels Mytilus edulis and Mytilus californianus. Biol Bull 1970, 138:1-13.
  • [39]Ieyama H: Karyotypes in eight species of family Mytilidae. Jap J Malac (Venus) 1984, 43:240-254.
  • [40]Moynihan EP, Mahon GAT: Quantitative karyotype analysis in the mussel Mytilus edulis L. Aquaculture 1983, 33:301-309.
  • [41]Thiriot-Quiévreux C: Chromosome analysis of three species of Mytilus (Bivalvia: Mytilidae). Mar Biol Lett 1984, 5:265-273.
  • [42]Dixon DR, Flavell N: A comparative study of the chromosomes of Mytilus edulis and Mytilus galloprovinvialis. J Mar Biol Ass UK 1986, 66:219-228.
  • [43]Pasantes J, Martínez-Expósito MJ, Martínez-Lage A, Méndez J: Chromosomes of Galician mussels. J Moll Stud 1990, 56:123-126.
  • [44]Mao Y, Cai H, Li C, Gao T: Molecular phylogenetics of genus Mytilus based on COI and 16S rRNA sequences. South China Fisheries Sci 2010, 6:27-36.
  • [45]Riginos C, Cunningham CW: Local adaptation and species segregation in two mussels (Mytilus edulis x Mytilus trossulus) hybrid zones. Mol Ecol 2005, 14:381-400.
  • [46]Rawson PD, Hilbish TJ: Asymmetric introgression of mitochondrial DNA among European populations of blue mussels (Mytilus spp.). Evolution 1998, 52:100-108.
  • [47]Väinölä R, Strelkov P: Mytilus trossulus in Northern Europe. Mar Biol 2011, 158:817-833.
  • [48]Brannock PM, Hilbish TJ: Hybridization results in high levels of sterility and restricted introgression between invasive and endemic marine blue mussels. Mar Ecol Prog Ser 2010, 406:161-171.
  • [49]Ort BS, Pogson GH: Molecular population genetics of the male and female mitochondrial DNA molecules of the California sea mussel, Mytilus californianus. Genetics 2007, 177:1087-1099.
  • [50]Chichvarkhin A, Kartavtsev I, Kafanov AI: Genetic connections between some species of Mytilidae (Mollusca: Bivalvia) from the northern part of the Pacific Ocean. Russian J Genet 2000, 36:1206-1220.
  • [51]Fidlerovà H, Senger G, Kost M, Sanseau P, Sheer D: Two simple procedures for releasing chromatin from routinely fixed cells for fluorescence in situ hybridization. Cytogenet Cell Genet 1994, 65:203-205.
  • [52]Estoup A, Largiadèr CR, Perrot E, Chourrout D: Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol Mar Biol Biotechnol 1996, 5:295-298.
  • [53]Freire R, Arias A, Insua AM, Méndez J, Eirín-López JM: Evolutionary dynamics of the 5S rDNA gene family in the mussel Mytilus: mixed effects of birth-and-death and concerted evolution. J Mol Evol 2010, 70:413-426.
  • [54]Fang BL, De Baere R, Vandenberghe A, De Wachter R: Sequences of three molluscan 5S ribosomal RNAs confirm the validity of a dynamic secondary structure model. Nucleic Acids Res 1982, 10:4679-4685.
  • [55]Giribet G, Distel D: Bivalve Phylogeny and Molecular Data. In Systematics and Phylogeography of Molluscks. Edited by Lydeard C, Lindberg DR. Washington DC: Smithsonian Books; 2003:45-90.
  • [56]Levan A, Fredga K, Sandberg AA: Nomenclature for centromeric position on chromosomes. Hereditas 1964, 52:201-220.
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