期刊论文详细信息
BMC Microbiology
PHB granules are attached to the nucleoid via PhaM in Ralstonia eutropha
Dieter Jendrossek2  Stephan Nussberger1  Daniel Pfeiffer2  Nora Schuth2  Andreas Wahl2 
[1] Biophysics Department, Institute of Biology, University of Stuttgart, Pfaffenwaldring 57, Stuttgart, 70550, Germany;Institute of Microbiology, University of Stuttgart, Allmandring 31, Stuttgart, 70550, Germany
关键词: Biodegradable polymer;    PhaM;    Storage metabolism;    PHB granule formation;    Polyhydroxyalkanoate (PHA);    Poly(3-hydroxybutyrate) (PHB);   
Others  :  1145037
DOI  :  10.1186/1471-2180-12-262
 received in 2012-09-06, accepted in 2012-11-09,  发布年份 2012
【 摘 要 】

Background

Poly(3-hydroxybutyrate) (PHB) granules are important storage compounds of carbon and energy in many prokaryotes which allow survival of the cells in the absence of suitable carbon sources. Formation and subcellular localization of PHB granules was previously assumed to occur randomly in the cytoplasm of PHB accumulating bacteria. However, contradictionary results on subcellular localization of PHB granules in Ralstonia eutropha were published, recently.

Results

Here, we provide evidence by transmission electron microscopy that PHB granules are localized in close contact to the nucleoid region in R. eutropha during growth on nutrient broth. Binding of PHB granules to the nucleoid is mediated by PhaM, a PHB granule associated protein with phasin-like properties that is also able to bind to DNA and to phasin PhaP5. Over-expression of PhaM resulted in formation of many small PHB granules that were always attached to the nucleoid region. In contrast, PHB granules of ∆phaM strains became very large and distribution of granules to daughter cells was impaired. Association of PHB granules to the nucleoid region was prevented by over-expression of PhaP5 and clusters of several PHB granules were mainly localized near the cell poles.

Conclusion

Subcellular localization of PHB granules is controlled in R. eutropha and depends on the presence and concentrations of at least two PHB granule associated proteins, PhaM and PhaP5.

【 授权许可】

   
2012 Wahl et al.; licensee BioMed Central Ltd.

附件列表
Files Size Format View
Figure 7. 171KB Image download
Figure 6. 50KB Image download
Figure 5. 66KB Image download
Figure 4. 162KB Image download
Figure 3. 74KB Image download
Figure 2. 49KB Image download
Figure 1. 62KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

Figure 5.

Figure 6.

Figure 7.

【 参考文献 】
  • [1]Schwartz E, Voigt B, Zühlke D, Pohlmann A, Lenz O, Albrecht D, Schwarze A, Kohlmann Y, Krause C, Hecker M, Friedrich B: A proteomic view of the facultatively chemolithoautotrophic lifestyle of Ralstonia eutropha H16. Proteomics 2009, 9:5132-5142.
  • [2]Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Pötter M, Schwartz E, Strittmatter A, Voss I, Gottschalk G, Steinbüchel A, Friedrich B, Bowien B: Genome sequence of the bioplastic-producing “Knallgas” bacterium Ralstonia eutropha H16. Nat Biotechnol 2006, 24:1257-1262.
  • [3]Reinecke F, Steinbüchel A: Ralstonia eutropha strain H16 as model organism for PHA metabolism and for biotechnological production of technically interesting biopolymers. J Mol Microbiol Biotechnol 2009, 16:91-108.
  • [4]Anderson AJ, Dawes EA: Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates. Microbiol Rev 1990, 54:450-472.
  • [5]Madison LL, Huisman GW: Metabolic engineering of poly(3-hydroxyalkanoates): from DNA to plastic. Microbiol Mol Biol Rev 1999, 63:21-53.
  • [6]Pötter M, Steinbüchel A: Biogenesis and Structure of polyhydroxyalkanoate granules. Microbiol Monogr 2006, 1:110-136.
  • [7]Stubbe J, Tian J: Polyhydroxyalkanoate (PHA) hemeostasis: the role of PHA synthase. Nat Prod Rep 2003, 20:445-457.
  • [8]Grage K, Jahns AC, Parlane N, Palanisamy R, Rasiah IA, Atwood JA, Rehm BHA: Bacterial polyhydroxyalkanoate granules: biogenesis, structure, and potential use as nano-/micro-beads in biotechnological and biomedical applications. Biomacromolecules 2009, 10:660-669.
  • [9]Stubbe J, Tian J, He A, Sinskey AJ, Lawrence AG, Liu P: Nontemplate-dependent polymerization processes: polyhydroxyalkanoate synthases as a paradigm. Annu Rev Biochem 2005, 74:433-480.
  • [10]Kumar A, Gross RA, Jendrossek D: Poly(3-hydroxybutyrate)-depolymerase from pseudomonas lemoignei: catalysis of esterifications in organic media. J Org Chem 2000, 65:7800-7806.
  • [11]Keshavarz T, Roy I: Polyhydroxyalkanoates: bioplastics with a green agenda. Curr Opin Microbiol 2010, 13:321-326.
  • [12]Gao X, Chen J-C, Wu Q, Chen G-Q: Polyhydroxyalkanoates as a source of chemicals, polymers, and biofuels. Curr Opin Biotechnol 2011, 22:768-774.
  • [13]Hazer B, Steinbüchel A: Increased diversification of polyhydroxyalkanoates by modification reactions for industrial and medical applications. Appl Microbiol Biotechnol 2007, 74:1-12.
  • [14]Jendrossek D: Polyhydroxyalkanoate granules are complex subcellular organelles (carbonosomes). J Bacteriol 2009, 191:3195-3202.
  • [15]Griebel R, Smith Z, Merrick JM: Metabolism of poly(β-hydroxybutyrate). I. Purification, composition, and properties of native poly(β-hydroxybutyrate) granules from Bacillus megaterium. Biochemistry 1968, 7:3676-3681.
  • [16]Boatman ES: Observations on the fine structure of spheroplasts of Rhodospirillum rubrum. J Cell Biol 1964, 20:297-311.
  • [17]Rehm BHA: Polyester synthases: natural catalysts for plastics. Biochem J 2003, 376:15-33.
  • [18]Cho M, Brigham CJ, Sinskey AJ, Stubbe J: Purification of a polyhydroxybutyrate synthase from its native organism, Ralstonia eutropha: implications in the initiation and elongation of polymer formation in vivo. Biochemistry 2012, 51:2276-2288.
  • [19]Pfeiffer D, Jendrossek D: Localization of PHB granule associated proteins during PHB granule formation and identification of two new phasins, PhaP6 and PhaP7, in Ralstonia eutropha H16. J Bacteriol 2012, 194:5909-5921.
  • [20]Pötter M, Müller H, Reinecke F, Wieczorek R, Fricke F, Bowien B, Friedrich B, Steinbüchel A: The complex structure of polyhydroxybutyrate (PHB) granules: four orthologous and paralogous phasins occur in Ralstonia eutropha. Microbiology (Reading Engl) 2004, 150:2301-2311.
  • [21]Kuchta K, Chi L, Fuchs H, Pötter M, Steinbüchel A: Studies on the influence of phasins on accumulation and degradation of PHB and nanostructure of PHB granules in Ralstonia eutropha H16. Biomacromolecules 2007, 8:657-662.
  • [22]Pfeiffer DN, Jendrossek D: Interaction between poly(3-hydroxybutyrate) granule-associated proteins as revealed by two-hybrid analysis and identification of a new phasin in Ralstonia eutropha H16. Microbiology 2011, 157:2795-2807.
  • [23]York GM, Junker BH, Stubbe JA, Sinskey AJ: Accumulation of the PhaP phasin of Ralstonia eutropha is dependent on production of polyhydroxybutyrate in cells. J Bacteriol 2001, 183:4217-4226.
  • [24]Jendrossek D, Handrick R: Microbial degradation of polyhydroxyalkanoates. Annu Rev Microbiol 2002, 56:403-432.
  • [25]Saito T, Kobayashi T: Instracellular degradation of PHAs. In Biopolymers: Polyesters II. Edited by Doi Y. Weinheim: Steinbüchel A Wiley-VCH; 2002:23-40.
  • [26]Uchino K, Saito T, Jendrossek D: Poly(3-hydroxybutyrate) (PHB) depolymerase PhaZa1 is involved in mobilization of accumulated PHB in Ralstonia eutropha H16. Appl Environ Microbiol 2008, 74:1058-1063.
  • [27]York GM, Lupberger J, Tian J, Lawrence AG, Stubbe J, Sinskey AJ: Ralstonia eutropha H16 encodes two and possibly three intracellular poly[D-(−)-3-hydroxybutyrate] depolymerase genes. J Bacteriol 2003, 185:3788-3794.
  • [28]Abe T, Kobayashi T, Saito T: Properties of a novel intracellular poly(3-hydroxybutyrate) depolymerase with high specific activity (PhaZd) in Wautersia eutropha H16. J Bacteriol 2005, 187:6982-6990.
  • [29]Kobayashi T, Uchino K, Abe T, Yamazaki Y, Saito T: Novel intracellular 3-hydroxybutyrate-oligomer hydrolase in Wautersia eutropha H16. J Bacteriol 2005, 187:5129-5135.
  • [30]Pötter M, Madkour MH, Mayer F, Steinbüchel A: Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16. Microbiology (Reading Engl) 2002, 148:2413-2426.
  • [31]York GM, Stubbe J, Sinskey AJ: The Ralstonia eutropha PhaR protein couples synthesis of the PhaP phasin to the presence of polyhydroxybutyrate in cells and promotes polyhydroxybutyrate production. J Bacteriol 2002, 184:59-66.
  • [32]Pfeiffer DN, Wahl A, Jendrossek D: Identification of a multifunctional protein, PhaM, that determines number, surface to volume ratio, subcellular localization and distribution to daughter cells of poly(3-hydroxybutyrate), PHB, granules in Ralstonia eutropha H16. Mol Microbiol 2011, 82:936-951.
  • [33]Jendrossek D: Fluorescence microscopical investigation of poly(3-hydroxybutyrate) granule formation in bacteria. Biomacromolecules 2005, 6:598-603.
  • [34]Hermawan S, Jendrossek D: Microscopical investigation of poly(3-hydroxybutyrate) granule formation in Azotobacter vinelandii. FEMS Microbiol Lett 2007, 266:60-64.
  • [35]Jendrossek D, Selchow O, Hoppert M: Poly(3-hydroxybutyrate) granules at the early stages of formation are localized close to the cytoplasmic membrane in Caryophanon latum. Appl Environ Microbiol 2007, 73:586-593.
  • [36]Tian J, Sinskey AJ, Stubbe J: Kinetic studies of polyhydroxybutyrate granule formation in Wautersia eutropha H16 by transmission electron microscopy. J Bacteriol 2005, 187:3814-3824.
  • [37]Tian J, He A, Lawrence AG, Liu P, Watson N, Sinskey AJ, Stubbe J: Analysis of transient polyhydroxybutyrate production in Wautersia eutropha H16 by quantitative Western analysis and transmission electron microscopy. J Bacteriol 2005, 187:3825-3832.
  • [38]Beeby M, Cho M, Stubbe J, Jensen GJ: Growth and localization of polyhydroxybutyrate granules in Ralstonia eutropha. J Bacteriol 2012, 194:1092-1099.
  • [39]Srivastava S, Urban M, Friedrich B: Mutagenesis of Alcaligenes eutrophus by insertion of the drug-resistance transposon Tn5. Arch Microbiol 1982, 131:203-207.
  • [40]Eltsov M, Zuber B: Transmission electron microscopy of the bacterial nucleoid. J Struct Biol 2006, 156:246-254.
  • [41]Robinow C, Kellenberger E: The bacterial nucleoid revisited. Microbiol Rev 1994, 58:211-232.
  • [42]Brigham CJ, Budde CF, Holder JW, Zeng Q, Mahan AE, Rha C, Sinskey AJ: Elucidation of beta-oxidation pathways in Ralstonia eutropha H16 by examination of global gene expression. J Bacteriol 2010, 192:5454-5464.
  • [43]Reynolds ES: The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. J Cell Biol 1963, 17:208-212.
  • [44]Sambrook J, Fritsch EF, Maniatis T: Molecular cloning: A laboratory manual. 2nd edition. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory; 1989.
  • [45]Simon R, Priefer U, Pühler A: A broad host- range mobilization system for in vivo genetic engineering: trans- poson mutagenesis in Gram-negative bacteria. Nat Biotechnol 1983, 1:784-791.
  • [46]Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM, Peterson KM: Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 1995, 166:175-176.
  文献评价指标  
  下载次数:48次 浏览次数:17次