期刊论文详细信息
BMC Microbiology
Identification of the replication region in pBCNF5603, a bacteriocin-encoding plasmid, in the enterotoxigenic Clostridium perfringens strain F5603
Masahiro Nagahama2  Masaya Takehara2  Masataka Oda1  Kensuke Okui2  Teruhisa Takagishi2  Soshi Seike2  Kazuaki Miyamoto2 
[1] Division of Microbiology and Infectious Diseases, Niigata University Graduate School of Medical and Dental Sciences, 2-5274, Gakkocho-dori, Chuo-ku 951-8514, Niigata, Japan;Department of Microbiology, Faculty of Pharmaceutical Sciences, Tokushima Bunri University, Yamashiro-cho 180, Tokushima 770-8514, Japan
关键词: Plasmid stability;    Plasmid compatibility;    rep gene;    Bacteriocin gene;    Clostridium perfringens;   
Others  :  1221678
DOI  :  10.1186/s12866-015-0443-3
 received in 2014-12-13, accepted in 2015-05-12,  发布年份 2015
PDF
【 摘 要 】

Background

Most recent studies of Clostridium perfringens plasmids have focused on toxin-encoding or antibiotic resistance plasmids. To cause intestinal disease, a toxigenic strain must grow in the intestines to levels allowing for sufficient toxin production and this in vivo growth often involves overcoming the normal intestinal microbial population. For this purpose, bacteriocin production might be important.

Results

In this study, as the first step in the genetic analysis of a co-existing plasmid with an enterotoxin gene (cpe)-encoding plasmid, the bacteriocin gene-encoding plasmid, pBCNF5603, was completely sequenced. This plasmid has some homology with two previously sequenced C. perfringens plasmids, namely, pCP13 carrying a cpb2 gene and pIP404 carrying a bcn gene. Using recombinant plasmids, the rep gene homologous to the PCP63 gene on pCP13 appeared to be functional. Comparative genomics indicated that the identified rep gene homologs were found on two additional toxin plasmids, pCP-OS1 and pCP-TS1. While functional analysis using recombinant plasmids indicated that pBCNF5603 and pCP13 are likely to be incompatible, the plasmid replication and partitioning region of pBCNF5603 alone was insufficient for stable maintenance of this plasmid.

Conclusions

These findings suggest that pBCNF5603 evolved from recombination events between C. perfringens plasmids and inter-species mobile genetic element(s). In addition, the bcn-encoding plasmid, pBCNF5603, is likely to be included in the Inc family, which includes pCP13 and two variant iota-encoding plasmids. Furthermore, the bcn gene on pBCNF5603 could contribute to gastrointestinal disease induced by enterotoxigenic C. perfringens.

【 授权许可】

   
2015 Miyamoto et al.; licensee BioMed Central.

【 预 览 】
附件列表
Files Size Format View
20150803035025570.pdf 955KB PDF download
Fig. 3. 121KB Image download
Fig. 2. 23KB Image download
Fig. 1. 24KB Image download
【 图 表 】

Fig. 1.

Fig. 2.

Fig. 3.

【 参考文献 】
  • [1]McClane BA, Robertson SL, Li J. Clostridium perfringens. In: Food Microbiology :Fundamentals and Frontiers. 4th ed. Doyle MP, Buchanan RL, editors. ASM press, Washington, D.C; 2013: p.465-490.
  • [2]Amimoto K, Noro T, Oishi E, Shimizu M. A novel toxin homologous to large clostridial cytotoxins found in culture supernatant of Clostridium perfringens type C. Microbiol. 2007; 153:1198-1206.
  • [3]Keyburn AL, Boyce JD, Vaz P, Bannam TL, Ford ME, Parker D, Di Rubbo A, Rood JI, Moore RJ. NetB, a new toxin that is associated with avian necrotic enteritis caused by Clostridium perfringens. PLoS Pathog. 2008; 4:e26.
  • [4]Petit L, Gibert M, Popoff MR. Clostridium perfringens: toxinotype and genotype. Trend Microbiol. 1999; 7:104-110.
  • [5]Barbara AJ, Trinh HT, Glock RD, Songer GJ. Necrotic enteritis-producing strains of Clostridium perfringens displace non-necrotic enteritis strains from the gut of chicks. Vet Microbiol. 2008; 126:377-382.
  • [6]Tagg JR, Dajani AS, Wannamaker LW. Bacteriocins of gram-positive bacteria. Microbiol Mol Biol Rev. 1976; 40:722-756.
  • [7]Kruger R, Pakowski SA, Filutowicz M. Participating elements in the replication of Iteron-containing plasmids. In: Plasmid Biology. Funnell BE, Phillips GJ, editors. ASM Press, Washington D. C; 2004: p.25-45.
  • [8]Miyamoto K, Fisher DJ, Li J, Sayeed S, Akimoto S, McClane BA. Complete sequencing and diversity analysis of the enterotoxin-encoding plasmids in Clostridium perfringens type A non-food-borne human gastrointestinal disease isolates. J Bacteriol. 2006; 188:1585-1598.
  • [9]Miyamoto K, Li J, Sayeed S, Akimoto S, McClane BA. Sequencing and diversity analyses reveal extensive similarities between some epsilon-toxin-encoding plasmids and the pCPF5603 Clostridium perfringens enterotoxin plasmid. J Bacteriol. 2008; 190:7178-7188.
  • [10]Shimizu T, Ohtani K, Hirakawa H, Ohshima K, Yamashita A, Shiba T, Ogasawara N, Hattori M, Kuhara S, Hayashi H. Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater. Proc Natl Acad Sci USA. 2002; 99:996-1001.
  • [11]Miyamoto K, Yumine N, Mimura K, Nagahama M, Li J, McClane BA, Akimoto S. Identification of novel Clostridium perfringens type E strains that carry an iota toxin plasmid with a functional enterotoxin gene. PLoS One. 2011; 6:e20376.
  • [12]Sloan J, Warner TA, Scott PT, Bannam TL, Berryman DI, Rood JI. Construction of a sequenced Clostridium perfringens-Escherichia coli shuttle plasmid. Plasmid. 1992; 27:207-219.
  • [13]Sarker MR, Carman RJ, McClane BA. Inactivation of the gene (cpe) encoding Clostridium perfringens enterotoxin eliminates the ability of two cpe-positive C. perfringens type A human gastrointestinal disease isolates to affect rabbit ileal loops. Mol Microbiol. 1999; 33:946-958.
  • [14]Gelder LD, Ponciano JM, Joyce P, Top EM. Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship. Microbiol. 2007; 153:452-463.
  • [15]Rood JI, Cole ST. Molecular genetics and pathogenesis of Clostridium perfringens. Microbiol Mol Biol Rev. 1991; 55:621-648.
  • [16]Dupuy B, Raffestin S, Matamouros S, Mani N, Popoff MR, Sonenshein AL. Regulation of toxin and bacteriocin gene expression in Clostridium by interchangeable RNA polymeraser sigma factors. Mol Microbiol. 2006; 60:1044-1057.
  • [17]Dupuy B, Mani N, Katayama S, Sonenshein AL. Transcription activation of a UV-inducible Clostridium perfringens bacteriocin gene by a novel σ factor. Mol Microbiol. 2005; 55:1196-1206.
  • [18]Paulsen IT, Banerjei L, Myers GSA, Nelson KE, Seshadri R, Read TD, Fouts DE, Eisen JA, Gill SR, Heidelberg JF, Tettelin H, Dodson RJ, Umayam L, Brinkac L, Beanan M, Daugherty S, DeBoy RT, Durkin S, Kolonay J, Madupu R, Nelson W, Vamathevan J, Tran B, Upton J, Hansen T, Shetty J, Khouri H, Utterback T, Radune D, Ketchum KA, Dougherty BA, Fraser CM. Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science. 2003; 299:2071-2074.
  • [19]Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, Wessels MR, Paulesen IT, Nelson KE, Margarit I, Read TD, Madoff LC, Wolf AM, Beanan MJ, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Kolonay JF, Madupu R, Lewis MR, Radune D, Fedorova ND, Scanlen D, Khouri H, Mulligan S, Carty HA, Cline RT, Van Aken SE, Gill J, Scarselli M, Mora M, Iacobin ET, Brettoni C, Galli G, Mariani M, Vegni F, Maione D, Rinaudo D, Rappuoli R, Telford JL, Kasper DL, Grandi G, Fraser CM. Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proc. Natl. Acad. Sci. USA. 2002; 99:12391-12396.
  • [20]Yonogi S, Matsuda S, Kawai T, Yoda T, Harada T, Kumeda Y, Gotoh K, Hiyoshi H, Nakamura S, Kodama T, Iida T. BEC, a novel enterotoxin of Clostridium perfringens found in human clinical isolates from acute gastroenteritis outbreaks. Infect Immun. 2014; 82:2390-2399.
  • [21]Nowell VJ, Kropinski AM, Songer JG, Maclnnes JI, Parreira VR, Prescott JF. Genome sequencing and analysis of a type A Clostridium perfringens isolate from a case of bovine clostridial abomasitis. PloS One. 2012; 7:e32271.
  • [22]Deguchi A, Miyamoto K, Kuwahara T, Miki Y, Kaneko I, Li J, McClane BA, Akimoto S. Genetic characterization of type A enterotoxigenic Clostridium perfringens strains. PLoS One. 2009; 4:e5598.
  • [23]Bannam TL, Teng WL, Bulach D, Lyras D, Rood JI. Functional identification of conjugation and replication regions of the tetracycline resistant plasmid pCW3 from Clostridium perfringens. J Bacteriol. 2006; 188:4942-4951.
  • [24]Parreira VR, Costa M, Eikmeyer F, Blom J, Prescott JF. Sequence of two plasmids from Clostridium perfringens chicken necrotic enteritis isolates and comparison with C. perfringens conjugative plasmids. PLos One. 2012; 7:e49753.
  • [25]Funnell BE, Slavcev DA. Partitioning systems of bacterial plasmids. In: Plasmid Biology. Funnell BE, Phillips GJ, editors. ASM Press, Washington D.C; 2004: p.81-103.
  文献评价指标  
  下载次数:70次 浏览次数:32次