| BMC Medical Genetics | |
| A case-only study of gene-environment interaction between genetic susceptibility variants in NOD2 and cigarette smoking in Crohn's disease aetiology | |
| Ute Nöthlings1  Andre Franke5  Stefan Schreiber5  Susanna Nikolaus2  Tobias Balschun5  Jochen Hampe2  Michael Nothnagel3  Katherine L Helbig4  | |
| [1] Biobank popgen, University Hospital Schleswig-Holstein, Christian-Albrechts-University of Kiel, Kiel, Germany;Department of General Internal Medicine, University Hospital Schleswig-Holstein, Christian-Albrechts-University of Kiel, Kiel, Germany;Institute of Medical Informatics and Statistics, Christian-Albrechts-University of Kiel, Kiel, Germany;Institute for Experimental Medicine, Section of Epidemiology, Christian-Albrechts-University of Kiel, Arnold-Heller-Straβe 3, Haus 3, 24105 Kiel, Germany;Institute for Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany | |
| 关键词: Cigarette smoking; NOD2/CARD15; Crohn's disease; Case-only; Gene-environment interaction; | |
| Others : 1177908 DOI : 10.1186/1471-2350-13-14 |
|
| received in 2011-11-03, accepted in 2012-03-14, 发布年份 2012 | |
PDF
|
|
【 摘 要 】
Background
Genetic variation in NOD2 and cigarette smoking are well-established risk factors for the development of Crohn's disease (CD). However, little is known about a potential interaction between these risk factors. We investigated gene-environment interactions between CD-associated NOD2 alleles and cigarette smoking in a large sample of patients with CD.
Methods
Three previously reported CD-associated variants in NOD2 (R702W, G908R, 1007fs) were genotyped in 1636 patients with CD continuously recruited between 1995 and 2010 based on physician referral. Data on history of smoking behaviour was obtained for all participants through a written questionnaire. Using a case-only design, we performed logistic regression analyses to investigate statistical interactions between NOD2 risk alleles and smoking status.
Results
We detected a significant negative interaction between carriership of at least one of the NOD2 risk alleles and history of ever having smoked (OR = 0.71; p = 0.005) as well as smoking at the time of CD diagnosis (OR = 0.68; p = 0.005). Subsequent separate analyses of the three variants revealed a significant negative interaction between the 1007fs variant and history of ever having smoked (OR = 0.64; p = 9 × 10-4) and smoking at the time of CD diagnosis (OR = 0.53; p = 7 × 10-5).
Conclusions
The observed significant negative gene-environment interaction suggests that the risk increase for CD conferred simultaneously by cigarette smoking and the 1007fs NOD2 polymorphism is smaller than expected and may point to a biological interaction. Our findings warrant further investigation in epidemiological and functional studies to elucidate pathophysiology as well as to aid in the development of recommendations for disease prevention.
【 授权许可】
2012 Helbig et al; BioMed Central Ltd.
【 预 览 】
| Files | Size | Format | View |
|---|---|---|---|
| 20150504032726184.pdf | 236KB |
【 参考文献 】
- [1]Loftus EV Jr: Clinical epidemiology of inflammatory bowel disease: incidence, prevalence, and environmental influences. Gastroenterology 2004, 126:1504-1517.
- [2]Abraham C, Cho JH: Inflammatory bowel disease. N Engl J Med 2009, 361:2066-2078.
- [3]Cho JH: The genetics and immunopathogenesis of inflammatory bowel disease. Nat Rev Immunol 2008, 8:458-466.
- [4]Halme L, Paavola-Sakki P, Turunen U, Lappalainen M, Farkkila M, Kontula K: Family and twin studies in inflammatory bowel disease. World J Gastroenterol 2006, 12:3668-3672.
- [5]Franke A, McGovern DP, Barrett JC, Wang K, Radford-Smith GL, Ahmad T, Lees CW, Balschun T, Lee J, Roberts R, et al.: Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. Nat Genet 2010, 42:1118-1125.
- [6]Hugot JP, Chamaillard M, Zouali H, Lesage S, Cezard JP, Belaiche J, Almer S, Tysk C, O'Morain CA, Gassull M, et al.: Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease. Nature 2001, 411:599-603.
- [7]Ogura Y, Bonen DK, Inohara N, Nicolae DL, Chen FF, Ramos R, Britton H, Moran T, Karaliuskas R, Duerr RH, et al.: A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease. Nature 2001, 411:603-606.
- [8]Barrett JC, Hansoul S, Nicolae DL, Cho JH, Duerr RH, Rioux JD, Brant SR, Silverberg MS, Taylor KD, Barmada MM, et al.: Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nat Genet 2008, 40:955-962.
- [9]Kobayashi KS, Chamaillard M, Ogura Y, Henegariu O, Inohara N, Nunez G, Flavell RA: Nod2-dependent regulation of innate and adaptive immunity in the intestinal tract. Science 2005, 307:731-734.
- [10]Maeda S, Hsu LC, Liu H, Bankston LA, Iimura M, Kagnoff MF, Eckmann L, Karin M: Nod2 mutation in Crohn's disease potentiates NF-kappaB activity and IL-1beta processing. Science 2005, 307:734-738.
- [11]Lesage S, Zouali H, Cezard JP, Colombel JF, Belaiche J, Almer S, Tysk C, O'Morain C, Gassull M, Binder V, et al.: CARD15/NOD2 mutational analysis and genotype-phenotype correlation in 612 patients with inflammatory bowel disease. Am J Hum Genet 2002, 70:845-857.
- [12]van Heel DA, Hunt KA, King K, Ghosh S, Gabe SM, Mathew CG, Forbes A, Playford RJ: Detection of muramyl dipeptide-sensing pathway defects in patients with Crohn's disease. Inflamm Bowel Dis 2006, 12:598-605.
- [13]Brant SR, Wang MH, Rawsthorne P, Sargent M, Datta LW, Nouvet F, Shugart YY, Bernstein CN: A population-based case-control study of CARD15 and other risk factors in Crohn's disease and ulcerative colitis. Am J Gastroenterol 2007, 102:313-323.
- [14]Hampe J, Cuthbert A, Croucher PJ, Mirza MM, Mascheretti S, Fisher S, Frenzel H, King K, Hasselmeyer A, MacPherson AJ, et al.: Association between insertion mutation in NOD2 gene and Crohn's disease in German and British populations. Lancet 2001, 357:1925-1928.
- [15]Yazdanyar S, Weischer M, Nordestgaard BG: Genotyping for NOD2 genetic variants and crohn disease: a metaanalysis. Clin Chem 2009, 55:1950-1957.
- [16]Hugot JP, Zaccaria I, Cavanaugh J, Yang H, Vermeire S, Lappalainen M, Schreiber S, Annese V, Jewell DP, Fowler EV, et al.: Prevalence of CARD15/NOD2 mutations in Caucasian healthy people. Am J Gastroenterol 2007, 102:1259-1267.
- [17]Lakatos PL: Environmental factors affecting inflammatory bowel disease: have we made progress? Dig Dis 2009, 27:215-225.
- [18]Silverstein MD, Lashner BA, Hanauer SB, Evans AA, Kirsner JB: Cigarette smoking in Crohn's disease. Am J Gastroenterol 1989, 84:31-33.
- [19]Somerville KW, Logan RF, Edmond M, Langman MJ: Smoking and Crohn's disease. Br Med J (Clin Res Ed) 1984, 289:954-956.
- [20]Aldhous MC, Satsangi J: The impact of smoking in Crohn's disease: no smoke without fire. Frontline Gastroenterol 2010, 1:156-164.
- [21]Calkins BM: A meta-analysis of the role of smoking in inflammatory bowel disease. Dig Dis Sci 1989, 34:1841-1854.
- [22]Mahid SS, Minor KS, Soto RE, Hornung CA, Galandiuk S: Smoking and inflammatory bowel disease: a meta-analysis. Mayo Clin Proc 2006, 81:1462-1471.
- [23]Sopori M: Effects of cigarette smoke on the immune system. Nat Rev Immunol 2002, 2:372-377.
- [24]Xavier RJ, Podolsky DK: Unravelling the pathogenesis of inflammatory bowel disease. Nature 2007, 448:427-434.
- [25]Ahmed FE: Role of genes, the environment and their interactions in the etiology of inflammatory bowel diseases. Expert Rev Mol Diagn 2006, 6:345-363.
- [26]Ernst A, Jacobsen B, Ostergaard M, Okkels H, Andersen V, Dagiliene E, Pedersen IS, Thorsgaard N, Drewes AM, Krarup HB: Mutations in CARD15 and smoking confer susceptibility to Crohn's disease in the Danish population. Scand J Gastroenterol 2007, 42:1445-1451.
- [27]de Diego C, Alcantara M, Valle J, Repiso A, Carrobles JM, Martinez-Castro P: Influence of smoking habits and CARD15 mutations on the onset of Crohn's disease. Scand J Gastroenterol 2006, 41:1209-1211.
- [28]van der Heide F, Nolte IM, Kleibeuker JH, Wijmenga C, Dijkstra G, Weersma RK: Differences in genetic background between active smokers, passive smokers, and non-smokers with Crohn's disease. Am J Gastroenterol 2010, 105:1165-1172.
- [29]Begg CB, Zhang ZF: Statistical analysis of molecular epidemiology studies employing case-series. Cancer Epidemiol Biomarkers Prev 1994, 3:173-175.
- [30]Khoury MJ, Flanders WD: Nontraditional epidemiologic approaches in the analysis of gene-environment interaction: case-control studies with no controls! Am J Epidemiol 1996, 144:207-213.
- [31]Piegorsch WW, Weinberg CR, Taylor JA: Non-hierarchical logistic models and case-only designs for assessing susceptibility in population-based case-control studies. Stat Med 1994, 13:153-162.
- [32]Dennis J, Hawken S, Krewski D, Birkett N, Gheorghe M, Frei J, McKeown-Eyssen G, Little J: Bias in the case-only design applied to studies of gene-environment and gene-gene interaction: a systematic review and meta-analysis. Int J Epidemiol 2011, 40:1329-1341.
- [33]Greenland S, Lash TL, Rothman KJ: Concepts of Interaction. In Modern Epidemiology. 3rd edition. Edited by Rothman KJ, Greenland S, Lash TL. Philadelphia: Lippincott Williams & Wilkins; 2008:71-83.
- [34]Albert PS, Ratnasinghe D, Tangrea J, Wacholder S: Limitations of the case-only design for identifying gene-environment interactions. Am J Epidemiol 2001, 154:687-693.
- [35]Noguchi E, Homma Y, Kang X, Netea MG, Ma X: A Crohn's disease-associated NOD2 mutation suppresses transcription of human IL10 by inhibiting activity of the nuclear ribonucleoprotein hnRNP-A1. Nat Immunol 2009, 10:471-479.
- [36]Cooney R, Baker J, Brain O, Danis B, Pichulik T, Allan P, Ferguson DJ, Campbell BJ, Jewell D, Simmons A: NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation. Nat Med 2010, 16:90-97.
- [37]Aldhous MC, Soo K, Stark LA, Ulanicka AA, Easterbrook JE, Dunlop MG, Satsangi J: Cigarette smoke extract (CSE) delays NOD2 expression and affects NOD2/RIPK2 interactions in intestinal epithelial cells. PLoS One 2011, 6:e24715.
- [38]Geng Y, Savage SM, Razani-Boroujerdi S, Sopori ML: Effects of nicotine on the immune response. II. Chronic nicotine treatment induces T cell anergy. J Immunol 1996, 156:2384-2390.
- [39]Chen H, Lee A, Bowcock A, Zhu W, Li E, Ciorba M, Hunt S: Influence of Crohn's disease risk alleles and smoking on disease location. Dis Colon Rectum 2011, 54:1020-1025.
- [40]Lennard-Jones JE: Classification of inflammatory bowel disease. Scand J Gastroenterol Suppl 1989, 170:2-6. discussion 16-19
- [41]Nikolaus S, Schreiber S: Diagnostics of inflammatory bowel disease. Gastroenterology 2007, 133:1670-1689.
- [42]Truelove SC, Pena AS: Course and prognosis of Crohn's disease. Gut 1976, 17:192-201.
- [43]Krawczak M, Nikolaus S, von Eberstein H, Croucher PJ, El Mokhtari NE, Schreiber S: PopGen: population-based recruitment of patients and controls for the analysis of complex genotype-phenotype relationships. Community Genet 2006, 9:55-61.
- [44]R Development Core Team: R Foundation for Statistical Computing. Vienna: R Development Core Team; 2010.
- [45]Gauderman W, Morrison J: QUANTO 1.1: A computer program for power and sample size calculations for genetic-epidemiology studies. [http://hydra.usc.edu/gxe] webcite 2006.
- [46]Gauderman WJ: Sample size requirements for matched case-control studies of gene-environment interaction. Stat Med 2002, 21:35-50.
- [47]Loftus EV Jr, Silverstein MD, Sandborn WJ, Tremaine WJ, Harmsen WS, Zinsmeister AR: Crohn's disease in Olmsted County, Minnesota, 1940-1993: incidence, prevalence, and survival. Gastroenterology 1998, 114:1161-1168.
PDF