期刊论文详细信息
BMC Medical Genetics
A combined targeted mutation analysis of IRF6 gene would be useful in the first screening of oral facial clefts
Yu-Ray Chen2  Chun-Shin Frank Chang2  Kuo-Ting Philip Chen2  Lun-Jou Lo1  Yah-Huei Wu-Chou3 
[1] Graduate Institute of Dental and Craniofacial Science, Chang Gung University, Taoyuan, Taiwan;Department of Plastic and Reconstructive Surgery, Chang Gung Memorial Hospital, Linkou, Taiwan;Graduate Institute of Clinical Medical Science, Chang Gung University, Taoyuan, Taiwan
关键词: Orofacial clefts;    Mutation analyses;    IRF6 gene;   
Others  :  1177716
DOI  :  10.1186/1471-2350-14-37
 received in 2012-11-06, accepted in 2013-03-13,  发布年份 2013
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【 摘 要 】

Background

Interferon Regulatory Factor 6 (IRF6) is a member of the IRF family of transcription factors. It has been suggested to be an important contributor to orofacial development since mutations of the IRF6 gene has been found in Van der Woude (VWS) and popliteal pterygium syndromes (PPS), two disorders that can present with isolated cleft lip and palate. The association between IRF6 gene and cleft lip and palate has also been independently replicated in many populations.

Methods

We screened a total of 155 Taiwanese patients with cleft lip with or without cleft palate (CL/P); 31 syndromic (including 19 VWS families), 44 non-syndromic families with at least two affected members, and 80 non-syndromic patients through a combined targeted, polymerase chain reaction (PCR)-based mutation analysis for the entire coding regions of IRF6 gene.

Results

We found 11 mutations in 57.89% (11/19) of the VWS patients and no IRF6 mutation in 44 of the non-syndromic multiplex families and 80 non-syndromic oral cleft patients. In this IRF6 gene screening, five of these mutations (c.290 A>G, p.Tyr97Cys; c.360-375 16 bp deletion, p.Gln120HisfsX24; c.411_412 insA, p.Glu136fsX3; c.871 A>C, p.Thr291Pro; c.969 G>A, and p.Trp323X) have not been reported in the literature previously. Exon deletion was not detected in this series of IRF6 gene screening.

Conclusions

Our results confirm the crucial role of IRF6 in the VWS patients and further work is needed to explore for its function in the non-syndromic oral cleft with vary clinical features.

【 授权许可】

   
2013 Wu-Chou et al.; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Shprintzen RJ: Terminology and classification of facial clefting. In Understanding craniofacial anomalies: the etiopathogenesis of craniosynostosis and facial clefting. Edited by Mooney MP, Siegel MI. New York: John Wiley and Sons; 2002:17-28.
  • [2]Marazita ML, Mooney MP: Current concepts in the embryology and genetics of cleft lip and cleft palate. Clin Plastic Surg 2004, 31:125-140.
  • [3]Cobourne MT: The complex genetics of cleft lip and palate. Eur J Orthodontics 2004, 26:7-16.
  • [4]Stanier P, Moore GE: Genetics of cleft lip and palate: syndromic genes contribute to the incidence of non-syndromic clefts. Hum Mol Genet 2004, 13:R73-81.
  • [5]Jugessur A, Murray JC: Orofacial clefting: recent insights into a complex trait. Curr Opin Genet Dev 2005, 15:270-278.
  • [6]Murray J: Gene/environment causes of cleft lip and/or palate. Clin Genet 2002, 61:248-256.
  • [7]Murray JC, Schutte BC: Cleft palate: players, pathways, and pursuits. J Clin Invest 2004, 113:1676-1678.
  • [8]Mossey PA, Little J, Munger RG, Dixon MJ, Shaw WC: Cleft lip and palate. Lancet 2009, 21:1773-1785.
  • [9]Dixon MJ, Marazita ML, Beaty TH, Murray JC: Cleft lip and palate: understanding genetic and environmental influences. Nat Rev Genet 2011, 12:167-178.
  • [10]Zucchero TM, Cooper ME, Maher BS, Daack-Hirsch S, Nepomuceno B, Ribeiro L: Interferon regulatory factor 6 (IRF6) gene variants and the risk of isolated cleft lip and palate. N Engl J Med 2004, 351:769-780.
  • [11]Mangold E, Ludwig KU, Nöthen MM: Breakthroughs in the genetics of orofacial clefting. Trends Mol Med 2011, 17(12):725-33.
  • [12]Kondo S, Schutte BC, Richardson RJ, Bjork BC, Knight AS, Watanabe Y: Mutations in IRF6 cause Van der Woude and popliteal pterygium syndrome. Nat Genet 2002, 32:285-289.
  • [13]Burdick AB, Bixler D, Puckett CL: Genetic analysis in families with Van der Woude syndrome. J Craniofac Genet Dev Biol 1985, 5:181-208.
  • [14]Schinzel A, Klausler M: The Van der Woude syndrome (dominantly inherited lip pits and clefts). J Med Genet 1986, 23:291-294.
  • [15]Rizos M, Spyropoulos MN: van der Woude syndrome: a review. Cardinal signs, epidemiology, associated features, differential diagnosis, expressivity, genetic counseling and treatment. Eur J Orthod 2004, 26:17Y24.
  • [16]de Lima RL, Hoper SA, Ghassibe M, Cooper ME, Rorick NK, Kondo S: Prevalence and nonrandom distribution of exonic mutations in interferon regulatory factor 6 in 307 families with Van der Woude syndrome and 37 families with popliteal pterygium syndrome. Genet Med 2009, 11(4):241-247.
  • [17]Blanton SH, Cortez A, Stal S, Mulliken JB, Finnell RH, Hecht JT: Variation in IRF6 contributes to nonsyndromic cleft lip and palate. Am J Med Genet A 2005, 137A:259-262.
  • [18]Ghassibe M, Bayet B, Revencu N, Verellen-Dumoulin C, Gillerot Y, Vanwijck R, Vikkula M: Interferon regulatory factor-6: a gene predisposing to isolated cleft lip with or without cleft palate in the Belgian population. Eur J Hum Genet 2005, 13:1239-42.
  • [19]Scapoli L, Palmieri A, Martinelli M, Pezzetti F, Carinci P, Tognon M, Carinci F: Strong evidence of linkage disequilibrium between polymorphisms at the IRF6 locus and nonsyndromic cleft lip with or without cleft palate, in an Italian population. A J Hum Genet 2005, 76:180-183.
  • [20]Srichomthong C, Siriwan P, Shotelersuk V: Significant association between IRF6 820G>A and nonsyndromic cleft lip with or without cleft palate in the Thai population. J Med Genet 2005, 42:e46.
  • [21]Park JW, McIntosh I, Hetmanski JB, Jabs EW, Vander Kolk CA, Wu-Chou YH: Association between IRF6 and nonsyndromic cleft lip with or without cleft palate in four populations. Genet Med 2007, 9:219-27.
  • [22]Vieira AR, Cooper ME, Marazita ML, Orioli IM, Castilla EE: Interferon regulatory factor 6 (IRF6) is associated with oral-facial cleft in individuals that originate in South America. A J Med Genet A 2007, 143:2075-78.
  • [23]Jugessur A, Rahimov F, Lie RT, Wilcox AJ, Gjessing HK, Nilsen RM, Nguyen TT, Murray JC: Genetic variants in IRF6 and the risk of facial clefts: single-marker and haplotype-based analyses in a population-based case-control study of facial clefts in Norway. Genet Epidemiol 2008, 32:413-24.
  • [24]Tan EC, Lim EC, Yap SH, Lee ST, Cheng J, Por YC, Yeow V: Identification of IRF6 gene variants in three families with Van der Woude syndrome. Int J Mol Med 2008, 21(6):747-51.
  • [25]Osoegawa K, Vessere GM, Utami KH, Mansilla MA, Johnson MK, Riley BM: Identification of novel candidate genes associated with cleft lip and palate using array comparative genomic hybridization. J Med Genet 2008, 45:81-6.
  • [26]Salahshourifar I, Halim AS, Sulaiman WA, Ariffin R, Naili Muhamad Nor N, Zilfalil BA: De novo interstitial deletion of 1q32.2–q32.3 including the entire IRF6 gene in a patient with oral cleft and other dysmorphic Features. Cytogenet Genome Res 2011, 134(2):83-7.
  • [27]Desmyter L, Ghassibe M, Revencu N, Boute O, Lees M, François G: IRF6 screening of syndromic and a priori non-syndromic cleft lip and palate patients: identification of a new type of minor VWS Sign. Mol Syndromol 2010, 1(2):67-74.
  • [28]Jehee FS, Burin BA, Rocha KM, Zechi-Ceide R, Bueno DF, Brito L: Novel mutations in IRF6 in nonsyndromic cleft lip with or without cleft palate: When should IRF6 mutational screening be done? Am J Med Genet A 2009, 149A:1319-1322.
  • [29]Jugessur A, Farlie PG, Kilpatricj N: The genetics of isolated orofacial clefts: from genotypes to subphenotypes. Oral Dis 2009, 15:437-453.
  • [30]Rutledge KD, Barger C, Grant JH, Robin NH: IRF6 mutations in mixed isolated familial clefting. Am J Med Genet A 2010, 152A:3107-3109.
  • [31]Salahshourifar I, Wan Sulaiman WA, Zilfalil BA, Halim AS: Mutation screening of IRF6 among families with non-syndromic oral clefts and identification of two novel variants: Review of the literature. Eur J Med Genet 2012, 55(6–7):389-93.
  • [32]Huang JJ, Hou JW, Tan YC, Chen KT, Lo LJ, Chen YR: Van der Woude Syndrome: Clinical Presentation in 64 Patients. Cleft Palate Craniofac J 2007, 44(6):649-52.
  • [33]Meng L, Bian Z, Torensma R, von den Hoff JW: Biological Mechanisms in Palatogenesis and Cleft Palate. J Dent Res 2009, 88(1):22-33.
  • [34]Wu T, Liang KY, Hetmanski JB, Ruczinski I, Fallin MD, Ingersoll RG: Evidence of gene-environment interaction for the IRF6 gene and maternal multivitamin supplementation in controlling the risk of cleft lip with/without cleft palate. Hum Genet 2010, 128(4):401-410.
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