BMC Genomics | |
Genome sequence of Erinnyis ello granulovirus (ErelGV), a natural cassava hornworm pesticide and the first sequenced sphingid-infecting betabaculovirus | |
Marlinda Lobo de Souza1  Bergmann Morais Ribeiro2  Sonia Nair Báo2  William Sihler1  Miguel de Souza Andrade2  Fernando Lucas de Melo2  Daniel Mendes Pereira Ardisson-Araújo2  | |
[1] Embrapa Genetic Resources and Biotechnology, Biological Station Park, 70770-917 Brasília, DF, Brazil;Cell Biology Department, Laboratory of Baculovirus, University of Brasília, 70910-900 Brasília, DF, Brazil | |
关键词: Betabaculovirus evolution; Horizontal gene transfer; Sphingidae; Baculovirus; Cassava hornworm; Biological control; | |
Others : 1136340 DOI : 10.1186/1471-2164-15-856 |
|
received in 2014-03-01, accepted in 2014-09-25, 发布年份 2014 | |
【 摘 要 】
Background
Cassava (Manihot esculenta) is the basic source for dietary energy of 500 million people in the world. In Brazil, Erinnyis ello ello (Lepidoptera: Sphingidae) is a major pest of cassava crops and a bottleneck for its production. In the 1980s, a naturally occurring baculovirus was isolated from E. ello larva and successfully applied as a bio-pesticide in the field. Here, we described the structure, the complete genome sequence, and the phylogenetic relationships of the first sphingid-infecting betabaculovirus.
Results
The baculovirus isolated from the cassava hornworm cadavers is a betabaculovirus designated Erinnyis ello granulovirus (ErelGV). The 102,759 bp long genome has a G + C content of 38.7%. We found 130 putative ORFs coding for polypeptides of at least 50 amino acid residues. Only eight genes were found to be unique. ErelGV is closely related to ChocGV and PiraGV isolates. We did not find typical homologous regions and cathepsin and chitinase homologous genes are lacked. The presence of he65 and p43 homologous genes suggests horizontal gene transfer from Alphabaculovirus. Moreover, we found a nucleotide metabolism-related gene and two genes that could be acquired probably from Densovirus.
Conclusions
The ErelGV represents a new virus species from the genus Betabaculovirus and is the closest relative of ChocGV. It contains a dUTPase-like, a he65-like, p43-like genes, which are also found in several other alpha- and betabaculovirus genomes, and two Densovirus-related genes. Importantly, recombination events between insect viruses from unrelated families and genera might drive baculovirus genomic evolution.
【 授权许可】
2014 Ardisson-Araújo et al.; licensee BioMed Central Ltd.
【 预 览 】
Files | Size | Format | View |
---|---|---|---|
20150312053607196.pdf | 2402KB | download | |
Figure 5. | 105KB | Image | download |
Figure 4. | 221KB | Image | download |
Figure 3. | 173KB | Image | download |
Figure 2. | 88KB | Image | download |
Figure 1. | 146KB | Image | download |
【 图 表 】
Figure 1.
Figure 2.
Figure 3.
Figure 4.
Figure 5.
【 参考文献 】
- [1]El-Sharkawy MA: Cassava biology and physiology. Plant Mol Biol 2004, 56(4):21.
- [2]Pietrowski V, Ringenberger R, Rheinheimer AR, Bellon PP, Gazola D, Miranda AM: Insetos-praga da cultura da mandioca na região Centro-Sul do Brasil. Volume 1. Marechal Cândido Rondon - Parana: EMBRAPA; 2010.
- [3]Bellotti AC, Arias B, Guzman OL: Biological control of the cassava hornworm erinnyis ello (Lepidoptera: Sphingidae). The Florida Entomologist 1992, 75(4):10.
- [4]Fazolin M, Estrela JLV, Filho MDC, Santiago ACC, Frota FS: Manejo Integrado do Mandarová-da-Mandioca Erinnyis ello (L.) (Lepidoptera: Sphingidae): Conceitos e Experiências na Região do Vale do Rio Juruá, Acre. Edited by Embrapa. Rio Branco, Brasil: Embrapa; 2007.
- [5]Schmitt AT: Eficiência da aplicação de Baculovirus erinnyis no controle do mandarová da mandioca. Volume 88. Florianópolis, Santa Catarina - Brasil: EMPASC Comunicado Técnico edn; 1985.
- [6]Schmitt AT: Principais insetos pragas da mandioca e seu controle. In Cultura de tuberosas amiláceas Latino Americanas. Volume 2. Edited by Cereda MP. São Paulo: Fundação Cargill; 2002::7.
- [7]Rohrmann GF: Baculovirus Molecular Biology, Third Edition [Internet] edn. Bethesda (MD): National Center for Biotechnology Information (US); 2011. Available from: http://www.ncbi.nlm.nih.gov/books/NBK49500/ webcite
- [8]Jehle JA, Blissard GW, Bonning BC, Cory JS, Herniou EA, Rohrmann GF, Theilmann DA, Thiem SM, Vlak JM: On the classification and nomenclature of baculoviruses: a proposal for revision. Arch Virol 2006, 151(7):1257-1266.
- [9]Herniou EA, Arif BM, Becnel JJ, Blissard GW, Bonning B, Harrison R, Jehle JA, Theilmann DA, Vlak JM: Baculoviridae. In Virus taxonomy Ninth Report of the International Committee on Taxonomy of Viruses. Edited by King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ. San Diego: Elsevier-Academic Press; 2012:163-173.
- [10]Moscardi F: Assessment of the application of baculoviruses for control of Lepidoptera. Annu Rev Entomol 1999, 44:257-289.
- [11]Ji X, Sutton G, Evans G, Axford D, Owen R, Stuart DI: How baculovirus polyhedra fit square pegs into round holes to robustly package viruses. EMBO J 2010, 29(2):505-514.
- [12]Slack J, Arif BM: The baculoviruses occlusion-derived virus: virion structure and function. Adv Virus Res 2007, 69:99-165.
- [13]Wang R, Deng F, Hou D, Zhao Y, Guo L, Wang H, Hu Z: Proteomics of the Autographa californica nucleopolyhedrovirus budded virions. J Virol 2010, 84(14):7233-7242.
- [14]Washburn JO, Chan EY, Volkman LE, Aumiller JJ, Jarvis DL: Early synthesis of budded virus envelope fusion protein GP64 enhances Autographa californica multicapsid nucleopolyhedrovirus virulence in orally infected Heliothis virescens. J Virol 2003, 77(1):280-290.
- [15]Herniou EA, Olszewski JA, Cory JS, O'Reilly DR: The genome sequence and evolution of baculoviruses. Annu Rev Entomol 2003, 48:211-234.
- [16]Herniou EA, Luque T, Chen X, Vlak JM, Winstanley D, Cory JS, O'Reilly DR: Use of whole genome sequence data to infer baculovirus phylogeny. J Virol 2001, 75(17):8117-8126.
- [17]Hoover K, Grove M, Gardner M, Hughes DP, McNeil J, Slavicek J: A gene for an extended phenotype. Science 2011, 333(6048):1401.
- [18]Ackermann H, Smirnoff W: A morphological investigation of 23 baculoviruses. J Invertebr Pathol 1983, 41:12.
- [19]Finnerty CM, Li G, Granados RR: Characterization of a granulovirus from the cassava hornworm (Erinnyis ello: Sphingidae). J Invertebr Pathol 2000, 75(4):273-278.
- [20]Jehle JA, Lange M, Wang H, Hu Z, Wang Y, Hauschild R: Molecular identification and phylogenetic analysis of baculoviruses from Lepidoptera. Virology 2006, 346(1):180-193.
- [21]Escasa SR, Lauzon HA, Mathur AC, Krell PJ, Arif BM: Sequence analysis of the Choristoneura occidentalis granulovirus genome. J Gen Virol 2006, 87(Pt 7):1917-1933.
- [22]Garavaglia MJ, Miele SA, Iserte JA, Belaich MN, Ghiringhelli PD: The ac53, ac78, ac101, and ac103 genes are newly discovered core genes in the family Baculoviridae. J Virol 2012, 86(22):12069-12079.
- [23]Wormleaton S, Kuzio J, Winstanley D: The complete sequence of the Adoxophyes orana granulovirus genome. Virology 2003, 311(2):350-365.
- [24]Zhang X, Liang Z, Yin X, Wang J, Shao X: Complete genome sequence of Agrotis segetum granulovirus Shanghai strain. Arch Virol 2014. http://dx.doi.org/10.1007/s00705-014-2001-y webcite
- [25]Liang Z, Zhang X, Yin X, Cao S, Xu F: Genomic sequencing and analysis of Clostera anachoreta granulovirus. Arch Virol 2011, 156(7):1185-1198.
- [26]Lange M, Jehle JA: The genome of the Cryptophlebia leucotreta granulovirus. Virology 2003, 317(2):220-236.
- [27]Luque T, Finch R, Crook N, O'Reilly DR, Winstanley D: The complete sequence of the Cydia pomonella granulovirus genome. J Gen Virol 2001, 82(Pt 10):2531-2547.
- [28]Ferrelli ML, Salvador R, Biedma ME, Berretta MF, Haase S, Sciocco-Cap A, Ghiringhelli PD, Romanowski V: Genome of Epinotia aporema granulovirus (EpapGV), a polyorganotropic fast killing betabaculovirus with a novel thymidylate kinase gene. BMC Genomics 2012, 13:14. BioMed Central Full Text
- [29]Harrison RL, Popham HJ: Genomic sequence analysis of a granulovirus isolated from the Old World bollworm, Helicoverpa armigera. Virus Genes 2008, 36(3):565-581.
- [30]Zhang BQ, Cheng RL, Wang XF, Zhang CX: The Genome of Pieris rapae Granulovirus. J Virol 2012, 86(17):9544.
- [31]Hashimoto Y, Hayakawa T, Ueno Y, Fujita T, Sano Y, Matsumoto T: Sequence analysis of the Plutella xylostella granulovirus genome. Virology 2000, 275(2):358-372.
- [32]Wang Y, Choi JY, Roh JY, Liu Q, Tao XY, Park JB, Kim JS, Je YH: Genomic sequence analysis of granulovirus isolated from the tobacco cutworm, Spodoptera litura. PLoS One 2011, 6(11):e28163.
- [33]Hayakawa T, Ko R, Okano K, Seong SI, Goto C, Maeda S: Sequence analysis of the Xestia c-nigrum granulovirus genome. Virology 1999, 262(2):277-297.
- [34]Darling AC, Mau B, Blattner FR, Perna NT: Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004, 14(7):1394-1403.
- [35]Lange M, Wang H, Zhihong H, Jehle JA: Towards a molecular identification and classification system of lepidopteran-specific baculoviruses. Virology 2004, 325(1):36-47.
- [36]Grant JR, Arantes AS, Stothard P: Comparing thousands of circular genomes using the CGView Comparison Tool. BMC Genomics 2012, 13:8. BioMed Central Full Text
- [37]Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA: Circos: an information aesthetic for comparative genomics. Genome Res 2009, 19(9):1639-1645.
- [38]Pearson MN, Rohrmann GF: Transfer, incorporation, and substitution of envelope fusion proteins among members of the Baculoviridae, Orthomyxoviridae, and Metaviridae (insect retrovirus) families. J Virol 2002, 76(11):5301-5304.
- [39]Oomens AG, Blissard GW: Requirement for GP64 to drive efficient budding of Autographa californica multicapsid nucleopolyhedrovirus. Virology 1999, 254(2):297-314.
- [40]Wang M, Yin F, Shen S, Tan Y, Deng F, Vlak JM, Hu Z, Wang H: Partial functional rescue of Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus infectivity by replacement of F protein with GP64 from Autographa californica multicapsid nucleopolyhedrovirus. J Virol 2010, 84(21):11505-11514.
- [41]Wang M, Tan Y, Yin F, Deng F, Vlak JM, Hu Z, Wang H: The F protein of Helicoverpa armigera single nucleopolyhedrovirus can be substituted functionally with its homologue from Spodoptera exigua multiple nucleopolyhedrovirus. J Gen Virol 2008, 89(Pt 3):791-798.
- [42]Lung O, Westenberg M, Vlak JM, Zuidema D, Blissard GW: Pseudotyping Autographa californica multicapsid nucleopolyhedrovirus (AcMNPV): F proteins from group II NPVs are functionally analogous to AcMNPV GP64. J Virol 2002, 76(11):5729-5736.
- [43]Harrison RL, Lynn DE: Genomic sequence analysis of a nucleopolyhedrovirus isolated from the diamondback moth, Plutella xylostella. Virus Genes 2007, 35(3):857-873.
- [44]Wennmann JT, Jehle JA: Detection and quantitation of Agrotis baculoviruses in mixed infections. J Virol Methods 2014, 197:39-46.
- [45]Ko R, Okano K, Maeda S: Structural and functional analysis of the Xestia c-nigrum granulovirus matrix metalloproteinase. J Virol 2000, 74(23):11240-11246.
- [46]Means JC, Passarelli AL: Viral fibroblast growth factor, matrix metalloproteases, and caspases are associated with enhancing systemic infection by baculoviruses. Proc Natl Acad Sci U S A 2010, 107(21):9825-9830.
- [47]Lepore LS, Roelvink PR, Granados RR: Enhancin, the granulosis virus protein that facilitates nucleopolyhedrovirus (NPV) infections, is a metalloprotease. J Invertebr Pathol 1996, 68(2):131-140.
- [48]D'Amico V, Slavicek J, Podgwaite JD, Webb R, Fuester R, Peiffer RA: Deletion of v-chiA from a baculovirus reduces horizontal transmission in the field. Appl Environ Microbiol 2013, 79(13):4056-4064.
- [49]Lima AA, Aragao CW, de Castro ME, Oliveira JV, Sosa Gomez DR, Ribeiro BM: A Recombinant MNPV Harboring and Genes from Defective NPV Induce Host Liquefaction and Increased Insecticidal Activity. PLoS One 2013, 8(9):e74592.
- [50]Cui Q, Shin WS, Luo Y, Tian J, Cui H, Yin D: Thymidylate kinase: an old topic brings new perspectives. Curr Med Chem 2013, 20(10):1286-1305.
- [51]Penades JR, Donderis J, Garcia-Caballer M, Tormo-Mas MA, Marina A: dUTPases, the unexplored family of signalling molecules. Curr Opin Microbiol 2013, 16(2):163-170.
- [52]Priet S, Sire J, Querat G: Uracils as a cellular weapon against viruses and mechanisms of viral escape. Curr HIV Res 2006, 4(1):31-42.
- [53]Castillo-Acosta VM, Aguilar-Pereyra F, Bart JM, Navarro M, Ruiz-Perez LM, Vidal AE, Gonzalez-Pacanowska D: Increased uracil insertion in DNA is cytotoxic and increases the frequency of mutation, double strand break formation and VSG switching in Trypanosoma brucei. DNA Repair (Amst) 2012, 11(12):986-995.
- [54]Guillet M, Van Der Kemp PA, Boiteux S: dUTPase activity is critical to maintain genetic stability in Saccharomyces cerevisiae. Nucleic Acids Res 2006, 34(7):2056-2066.
- [55]Herniou EA, Jehle JA: Baculovirus phylogeny and evolution. Curr Drug Targets 2007, 8(10):1043-1050.
- [56]Ho CK, Shuman S: Bacteriophage T4 RNA ligase 2 (gp24.1) exemplifies a family of RNA ligases found in all phylogenetic domains. Proc Natl Acad Sci U S A 2002, 99(20):12709-12714.
- [57]Yu M, Carstens EB: Characterization of an Autographa californica multiple nucleopolyhedrovirus mutant lacking the ac39(p43) gene. Virus Res 2011, 155(1):300-306.
- [58]Zhu SY, Yi JP, Shen WD, Wang LQ, He HG, Wang Y, Li B, Wang WB: Genomic sequence, organization and characteristics of a new nucleopolyhedrovirus isolated from Clanis bilineata larva. BMC Genomics 2009, 10:91. BioMed Central Full Text
- [59]Lauzon HA, Lucarotti CJ, Krell PJ, Feng Q, Retnakaran A, Arif BM: Sequence and organization of the Neodiprion lecontei nucleopolyhedrovirus genome. J Virol 2004, 78(13):7023-7035.
- [60]O'Reilly D, Miller LK, Luckow VA: Baculovirus Expression Vectors: a laboratory manual. New York: Freeman and Company; 1992.
- [61]Sambrook J, Russel DW: Molecular Cloning: a laboratory manual, 3rd ed. edn. New York: Cold Spring Harbor; 2001.
- [62]Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A: Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 2012, 28(12):1647-1649.
- [63]Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402.
- [64]Katoh K, Misawa K, Kuma K, Miyata T: MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002, 30(14):3059-3066.
- [65]Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O: New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59(3):307-321.
- [66]Abascal F, Zardoya R, Posada D: ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21(9):2104-2105.
- [67]Stamatakis A, Hoover P, Rougemont J: A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 2008, 57(5):758-771.